Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1019
         (623 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51449| Best HMM Match : tRNA-synt_2c (HMM E-Value=1.4)              30   1.3  
SB_37109| Best HMM Match : PBP_dimer (HMM E-Value=3.1)                 29   4.1  
SB_29214| Best HMM Match : Homeobox (HMM E-Value=2.2)                  27   9.4  

>SB_51449| Best HMM Match : tRNA-synt_2c (HMM E-Value=1.4)
          Length = 742

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
 Frame = -3

Query: 201 WTVVPPNKFFIRGLSENTLYFPSISISQVNSYPPISFSKSIFIELNLQVF-----TPFA* 37
           W  +PP  + +  L+   LY   I IS   +   + F ++IFI L++ ++     TP   
Sbjct: 244 WAELPPQNYGLTFLTFIILYNNLIPISLTVTLEVVKFIQAIFINLDIDMYYAPSDTPAMA 303

Query: 36  PSSNPRAEFLQP 1
            +SN   E  QP
Sbjct: 304 RTSNLNEELGQP 315


>SB_37109| Best HMM Match : PBP_dimer (HMM E-Value=3.1)
          Length = 459

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 428 KFVMDTFGRSFFDKAMDIFYSYTSKFFGTVPAKHYLTD 541
           KFV+ TF  +   KAM + YS+  +   T+P    + D
Sbjct: 396 KFVLPTFDTTITSKAMPLGYSFVKEDPSTIPDPKLICD 433


>SB_29214| Best HMM Match : Homeobox (HMM E-Value=2.2)
          Length = 192

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/70 (22%), Positives = 28/70 (40%)
 Frame = +2

Query: 350 KFYADNLFLGEQEASKLVTTFLNENWKFVMDTFGRSFFDKAMDIFYSYTSKFFGTVPAKH 529
           K+      LGE    K     +  +     D+ GR  FD A  +  +  + FF  + +K 
Sbjct: 33  KYLTSKFMLGEATGQKSDPASVARSMMIAKDSNGRRLFDFADFLTANQIAGFFSRLASKK 92

Query: 530 YLTDDFTSIA 559
            L D+   ++
Sbjct: 93  TLDDEVDEVS 102


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,576,975
Number of Sequences: 59808
Number of extensions: 384978
Number of successful extensions: 902
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)