Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1019
         (623 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    41   1e-05
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    24   1.4  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    24   1.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.4  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   5.6  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 40.7 bits (91), Expect = 1e-05
 Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
 Frame = +2

Query: 209 GNGKVQLEKLQISMKFPVYAQKRD-DGEIYMKCDYSKIKYDYQILGKTKFYADNLFLGEQ 385
           G GK  +    +     +Y +K + +GE Y++     +K++     K K   +NLF G +
Sbjct: 144 GAGKSNITMYDLKSHNDIYCEKYEKNGETYLRIKKHAVKFNP---AKVKLRFENLFDGNK 200

Query: 386 EASKLVTTFLNENWKFVMDTFGRSFFDKAMDIFYSYTSKFFGTVP 520
           E  + +  F+NEN + +      ++ +    +F    ++ F  VP
Sbjct: 201 ELGEQMNRFINENSELLFKELQAAYEETFSLVFTKIDNEIFNRVP 245


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +2

Query: 434 VMDTFGRSFFDKAMDIFYSYTSKFFGTVP 520
           +++ FGR FF+   D  Y    +  G  P
Sbjct: 66  ILELFGRMFFEFCQDSGYDKILQVLGATP 94


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +2

Query: 434 VMDTFGRSFFDKAMDIFYSYTSKFFGTVP 520
           +++ FGR FF+   D  Y    +  G  P
Sbjct: 66  ILELFGRMFFEFCQDSGYDKILQVLGATP 94


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 156 PKALL*RTCWEARPSMAKEMEKF 224
           P+AL   T W+ RPS  +E E+F
Sbjct: 577 PRALW-PTEWKVRPSTVEEREEF 598


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 143 YKVFSESPLIKNLLGGTT 196
           Y + + +PL+K L GG +
Sbjct: 115 YNITNSTPLLKKLYGGNS 132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,347
Number of Sequences: 438
Number of extensions: 3568
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)