Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1017
         (631 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0058 - 478708-478731,478802-478834,478953-479100,479423-48...    32   0.43 
10_08_0816 + 20789399-20789728,20790098-20790420,20791437-207915...    31   1.00 
06_02_0042 - 10901321-10901486,10903417-10903517,10903696-109038...    30   1.7  
05_02_0072 - 6334613-6335215                                           29   2.3  

>03_01_0058 -
           478708-478731,478802-478834,478953-479100,479423-480072
          Length = 284

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 257 WLHRFLNTIFTWVRDHRLHHKYT 325
           W+HR L+T + +   HR+HH++T
Sbjct: 142 WIHRLLHTPWAYHHIHRVHHEFT 164


>10_08_0816 +
           20789399-20789728,20790098-20790420,20791437-20791584,
           20791679-20791711,20791879-20791950
          Length = 301

 Score = 30.7 bits (66), Expect = 1.00
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +2

Query: 212 LLVYMDFISVSPQQNWLHRFLNTIFTWVRDHRLHHKYT 325
           LLVY  F+       W+HR L+  + + + HR+HH++T
Sbjct: 130 LLVY--FLVEDYLNYWIHRLLHGEWGYEKIHRVHHEFT 165


>06_02_0042 -
           10901321-10901486,10903417-10903517,10903696-10903894,
           10904642-10904769
          Length = 197

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/53 (22%), Positives = 27/53 (50%)
 Frame = +1

Query: 385 VVGAKTSNGENCWKEP*HVRYLL*SSFKISEKVRNTIYRNNMFYHTDISSNVF 543
           + G      E  W+ P  +RYL   + K+  K+R   ++  ++++ ++  N+F
Sbjct: 103 LTGVARPETEEDWRIP-LIRYLKVPTLKVDRKIRRQAFKYTLYWNVELWKNLF 154


>05_02_0072 - 6334613-6335215
          Length = 200

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +2

Query: 359 GFFFSHIGWLLVRKHPMVKIAGKSLDMSDIYCNPLLRFQKKYAIP 493
           GF  SH+   L+R HP  ++   +LD  D YC  L       A P
Sbjct: 33  GFIASHVANRLLRDHPSYRVV--ALDKLDDYCATLNNLAPAMASP 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,484,945
Number of Sequences: 37544
Number of extensions: 329403
Number of successful extensions: 665
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)