Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1017
         (631 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)              145   2e-35
SB_42121| Best HMM Match : EGF_CA (HMM E-Value=8.7)                    44   1e-04
SB_6574| Best HMM Match : eIF-6 (HMM E-Value=1.60028e-42)              29   4.1  
SB_36213| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.033)             28   5.4  
SB_45095| Best HMM Match : DUF1168 (HMM E-Value=0.74)                  28   7.2  

>SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)
          Length = 268

 Score =  145 bits (352), Expect = 2e-35
 Identities = 65/119 (54%), Positives = 86/119 (72%), Gaps = 1/119 (0%)
 Frame = +2

Query: 275 NTIFTWVRDHRLHHKYTDTDADPHNATRGFFFSHIGWLLVRKHPMVKIAGKSLDMSDIYC 454
           N IF W RDHR+HHKY++TDADPHNA RGFFFSH+GWL+ RKHP V   GK +D+SD+Y 
Sbjct: 53  NDIFEWSRDHRVHHKYSETDADPHNAKRGFFFSHVGWLMQRKHPDVIRKGKGIDLSDLYA 112

Query: 455 NPLLRFQKKYAIPFIGTICFIIPTLAPMYFWGESLNNAWHIT-VLRYIFSLNGTFLVNS 628
           + ++ FQ+++       +C +IPTL P   WGESL NA+  +  LRY+ +LN T+ VNS
Sbjct: 113 DSVVMFQRRHYKKISMLMCVLIPTLVPS-LWGESLWNAYFTSFALRYVITLNVTWCVNS 170


>SB_42121| Best HMM Match : EGF_CA (HMM E-Value=8.7)
          Length = 202

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 22/42 (52%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
 Frame = +2

Query: 506 ICFIIPTLAPMYFWGESLNNAWHIT-VLRYIFSLNGTFLVNS 628
           +C +IPTL P   WGESL NA+  +  LRY+ +LN T+ VNS
Sbjct: 10  MCVLIPTLVPS-LWGESLWNAYFTSFALRYVITLNVTWCVNS 50


>SB_6574| Best HMM Match : eIF-6 (HMM E-Value=1.60028e-42)
          Length = 618

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 181 MNVIRFSYLHIAGLYGLYLCFTSAKLATSVF 273
           MN  +F YL++ G+ GL+  F +A ++  VF
Sbjct: 284 MNGKKFKYLYVTGVAGLFWGFLAAAVSCCVF 314


>SB_36213| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.033)
          Length = 708

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = -2

Query: 621 TRKVPLRLKM----YLKTVICQALFKLSPQKYIGANVGMIKHIVPINGIAYFF 475
           TR V LRLK     Y + + CQ   +L+ Q+ + A VG ++H  P+     FF
Sbjct: 520 TRAVELRLKAQGYNYEEVLECQFDVQLNTQRELRALVGDVEHGKPLEARDAFF 572


>SB_45095| Best HMM Match : DUF1168 (HMM E-Value=0.74)
          Length = 604

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +2

Query: 380 GWLLVRKHPMVKIAGKSLDMSDIYCNPLLRFQKKYAIPFIGTICFIIPT 526
           GW +  + P   I G+  D   I  NPL     ++ I   GT+    PT
Sbjct: 527 GWTVKPRSPTPSIDGQGEDQFVIEVNPLQMDSDEFDIQHTGTLASFDPT 575


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,592,250
Number of Sequences: 59808
Number of extensions: 408036
Number of successful extensions: 990
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)