Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG1015
(621 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb... 31 0.13
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 29 0.54
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi... 26 5.1
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 26 5.1
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 25 6.7
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo... 25 6.7
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 25 6.7
SPBC83.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 25 8.8
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 25 8.8
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 25 8.8
>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 31.1 bits (67), Expect = 0.13
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 16 LRVFDNRIMILHKLIVSINYSRISTTQGPVVSSY 117
LRVFD ++ LH ++ I Y+ + T PV Y
Sbjct: 564 LRVFDGQVEKLHSVLEEIGYNWVDETNNPVYLRY 597
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 29.1 bits (62), Expect = 0.54
Identities = 8/18 (44%), Positives = 16/18 (88%)
Frame = -3
Query: 148 LDVCFCLDLHNKNLLLVP 95
+DVC+C+++H++ +LVP
Sbjct: 348 VDVCYCVEVHSQQTILVP 365
>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 749
Score = 25.8 bits (54), Expect = 5.1
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -1
Query: 297 LQDLSKSSNGFLGHYCYSVNG 235
LQD KSSNG +Y S NG
Sbjct: 118 LQDFIKSSNGGFSNYGSSANG 138
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 25.8 bits (54), Expect = 5.1
Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Frame = +1
Query: 70 NYSRISTTQGPVVSSYCVNQGKNTHQVGN*INSNKAGYVTGYGYHLAPSGL*AH--LPVY 243
NYS P V+SY HQ N V G +AP+ + H P+Y
Sbjct: 321 NYSTTRVDNDPHVASYSPQNSNFDHQAAATTNDAHQNVVRGSAITIAPTPVPRHNRRPIY 380
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 25.4 bits (53), Expect = 6.7
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = -3
Query: 316 KYYTFLFTRSFKIFEWISRSLLL*CKRVNVLTVHLELSGNRSP*HSPPYYYLFNYPL 146
++Y L T+ + + +S L KR++ ++V L G S PYYY F++ L
Sbjct: 928 EFYDRLSTKFLECDFLVKQSEPLDRKRIDAISVILSECGFVLFNFSQPYYYYFSFLL 984
>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 432
Score = 25.4 bits (53), Expect = 6.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 243 HYNNNDREIHSKILKDLVNKKV*YLTLY 326
HY NN E +S + K V KK+ + +Y
Sbjct: 197 HYVNNSGEAYSTVQKLAVQKKIGNIRMY 224
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 25.4 bits (53), Expect = 6.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 243 HYNNNDREIHSKILKDLVNKK 305
HYN N+RE ILK + KK
Sbjct: 1086 HYNKNEREESDTILKKRLAKK 1106
>SPBC83.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 161
Score = 25.0 bits (52), Expect = 8.8
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +1
Query: 40 MILHKLIVSINYSRISTTQGPVVSSY 117
M +K +++INY +S+ GP Y
Sbjct: 32 MKFYKCVLTINYISVSSMSGPFTGPY 57
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 25.0 bits (52), Expect = 8.8
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = -1
Query: 423 LLVTCRSLIILSVKIKSKFL*FVINKNIACKSDTRLNIILFYLQDLSKSSNGFLG 259
LL+TCRS S + + F N N C++D++ ++ + + KS + F+G
Sbjct: 347 LLLTCRS----SNRFRL-FPASTPNSNGLCRNDSKCRFLMILPETIIKSPSSFIG 396
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 25.0 bits (52), Expect = 8.8
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +1
Query: 547 PYGAIWRFFPNVVN 588
PYG WRFF N N
Sbjct: 2161 PYGQAWRFFWNTSN 2174
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,357,268
Number of Sequences: 5004
Number of extensions: 44981
Number of successful extensions: 87
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -