Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1015
         (621 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0376 - 22474473-22476947                                         30   1.7  
03_05_0783 - 27662178-27662237,27662659-27662700,27662791-276628...    27   9.1  

>02_04_0376 - 22474473-22476947
          Length = 824

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 31  NRIMILHKLIVSINYSRISTTQGPVVSSYC 120
           N  +++HKL+   NY  ++ T G +VSS C
Sbjct: 515 NYTIVIHKLLKERNYGLVARTWGEMVSSGC 544


>03_05_0783 -
           27662178-27662237,27662659-27662700,27662791-27662892,
           27662991-27663147,27663230-27663307,27663391-27663446,
           27663557-27663634,27663736-27663867,27663943-27664078,
           27664252-27664403,27665317-27665391,27665476-27665535,
           27665865-27665944,27666392-27666462,27666549-27666689,
           27667467-27667555,27668657-27668731,27669303-27669401,
           27669526-27669572,27669654-27669875,27671485-27671557,
           27671650-27671823
          Length = 732

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -2

Query: 62  TISLCNIMILLSKTLKLLP 6
           T+SLC IM+ ++  LKLLP
Sbjct: 470 TVSLCVIMVEITNNLKLLP 488


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,397,166
Number of Sequences: 37544
Number of extensions: 232621
Number of successful extensions: 375
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)