Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1015
         (621 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    27   0.19 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    26   0.34 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    25   0.79 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.4  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   4.2  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -1

Query: 399 IILSVKIKSKFL*FVINKNIACKSDTRLNIILFYL 295
           I+ ++ ++ K L + +N  I C   + L++++FYL
Sbjct: 226 IVFNITLRRKTLFYTVNLIIPCVGISFLSVLVFYL 260


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 399 IILSVKIKSKFL*FVINKNIACKSDTRLNIILFYL 295
           I  ++ ++ K L + +N  I C   T L +++FYL
Sbjct: 239 ITFNITMRRKTLFYTVNLIIPCVGITFLTVLVFYL 273


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -1

Query: 399 IILSVKIKSKFL*FVINKNIACKSDTRLNIILFYL 295
           I  ++ ++ K L + +N  I C   + L +++FYL
Sbjct: 230 ITFNITMRRKTLFYTVNLIIPCMGISFLTVLVFYL 264


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -1

Query: 399 IILSVKIKSKFL*FVINKNIACKSDTRLNIILFYL 295
           I  ++ ++ K L + +N  I C   + L ++ FYL
Sbjct: 234 ITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYL 268


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -1

Query: 399 IILSVKIKSKFL*FVINKNIACKSDTRLNIILFYL 295
           I  ++ ++ K L + +N  I C   + L ++ FYL
Sbjct: 234 ITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYL 268


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -1

Query: 108 YYWSLSSRNST--IIN*NYKFVQYHDSIVKDS*TSTCS 1
           Y W  + R+S   +++   KF+ + DS+   + TSTCS
Sbjct: 483 YAWIGAGRDSDSRLLDLCTKFLMHKDSLGLSTATSTCS 520


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 588 IYYIWKEAPY 559
           IYYIW   PY
Sbjct: 111 IYYIWSHFPY 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,941
Number of Sequences: 438
Number of extensions: 3390
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)