Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1015
         (621 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g01500.1 68415.m00073 homeobox-leucine zipper transcription f...    30   1.4  
At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein si...    28   4.3  
At5g26240.1 68418.m03129 chloride channel protein (CLC-d) identi...    27   7.6  

>At2g01500.1 68415.m00073 homeobox-leucine zipper transcription
           factor family protein similar to wuschel protein
           (GI:22087128) [Arabidopsis thaliana]
          Length = 271

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 67  INYSRISTTQGPVVSSYCVNQGKNTHQV 150
           INY  +STTQ P++ ++C   G + HQ+
Sbjct: 10  INYLPLSTTQPPLLLTHCDINGNDHHQL 37


>At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein
           similar to chitinase/lysozyme GI:467689 from [Nicotiana
           tabacum]
          Length = 366

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/26 (57%), Positives = 17/26 (65%)
 Frame = -1

Query: 159 LITHLMCVFALIYTIRTYYWSLSSRN 82
           L THL C FA I T+ TY   +SSRN
Sbjct: 46  LFTHLFCAFADINTL-TYQVIVSSRN 70


>At5g26240.1 68418.m03129 chloride channel protein (CLC-d) identical
           to CLC-d chloride channel protein [Arabidopsis thaliana]
           GI:1742959
          Length = 792

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -2

Query: 62  TISLCNIMILLSKTLKLLP 6
           T+SLC IM+ ++  LKLLP
Sbjct: 523 TVSLCVIMVEITNNLKLLP 541


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,609,025
Number of Sequences: 28952
Number of extensions: 211943
Number of successful extensions: 374
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)