Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1014
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    92   7e-20
SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomy...    32   0.057
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    29   0.70 
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    28   1.2  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   2.8  
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar...    26   4.9  
SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|c...    26   4.9  
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    25   6.5  
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    25   8.6  

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 91.9 bits (218), Expect = 7e-20
 Identities = 37/95 (38%), Positives = 62/95 (65%)
 Frame = +2

Query: 314 FLNTIFTWVRDHRLHHKYTDTDADPHNATRGFFFSHIGWLLVRKHPMVKIAGKSLDMSDI 493
           F  +I  W RDHR HH+YTDTD DP+N  +GF+++H+GW+++ ++P  +  G+S D+SD+
Sbjct: 136 FEGSIRWWSRDHRAHHRYTDTDKDPYNVKKGFWYAHVGWMIILQNP--RRIGRS-DVSDL 192

Query: 494 YCNPLLRFQKKYAIPFIGTICFIIPTLAPMYFWGE 598
             +P + F  ++ +P    + FI P+L     WG+
Sbjct: 193 NSDPFVMFNHRHFLPIASFMAFIFPSLFCGLLWGD 227


>SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 32.3 bits (70), Expect = 0.057
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 302 WLHRFLNTIFTWVRDHRLHHKY 367
           W HRFL+  + + R H+LHHK+
Sbjct: 135 WAHRFLHHRYVYPRLHKLHHKW 156


>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +2

Query: 245 AIYILLVYMDFISVSPQQNWLHRFLNTIFTWVRDHRLHHKY 367
           +I + L++ DF+       W+HR L+  + +   H+LHHK+
Sbjct: 154 SIALFLLFSDFLIY-----WIHRALHHRWLYAPLHKLHHKW 189


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 121 SVDKTNETEYLKDNHVDYEKLIAPQASPIKHKIVVM 228
           S+   N  EYL D+ V+  KL   +  P+K K++ +
Sbjct: 28  SLTSINSAEYLYDSFVEISKLPLEKKLPLKWKLITV 63


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 434  TTSRCVRKKNLS*HYEGLHQC 372
            T +  V KKN+S H+EG+ +C
Sbjct: 1538 TDALLVLKKNISMHFEGVEEC 1558


>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 539 MVLRTFSEILKEDYNKYLTCQGSFQQFS-PLDVFAPTTSRCVRKKNL 402
           MV+R +    +E+Y KY    G F+Q +  L +  PT    ++ +NL
Sbjct: 31  MVMRRYHISKREEYQKYNIICGKFRQLAHRLSLLDPTDPFRLQYENL 77


>SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +1

Query: 163 HVDYEKLIAPQASPIKHKIVVMNVIRFSYLHIAGLYGLYLCFTSAKLATSVFEHHF 330
           H  YE L+A   + I     +  V++FSY  + G Y  +L  ++  L  S   H F
Sbjct: 162 HHTYEFLLAYPNAYIA--AALQTVVQFSYTTVFGWYTTHLFLSTHSLFPSFLVHAF 215


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -3

Query: 473 SFQQFSPLDVFAPTTSRCVRKKN 405
           SF   +PL VFAP TSR +R  N
Sbjct: 201 SFDPLAPL-VFAPNTSRVLRVTN 222


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +1

Query: 115 PNSVDKTNETEYLKDNHVDYE---KLIAPQASPIKHKIVVM 228
           PN V   N +  +  NH+D E   KLI  +   ++ +I V+
Sbjct: 589 PNQVSMPNISNIVSTNHLDVETQMKLIMDENQRLREQIAVL 629


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,528,751
Number of Sequences: 5004
Number of extensions: 52413
Number of successful extensions: 123
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)