Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1013
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)             179   2e-45
SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   6e-08
SB_42516| Best HMM Match : EF1_GNE (HMM E-Value=3.3e-05)               39   0.003
SB_17859| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.35 
SB_4378| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.1  
SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_15649| Best HMM Match : EF1_GNE (HMM E-Value=0.025)                 30   1.9  
SB_42404| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_55208| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_25408| Best HMM Match : ABC_tran (HMM E-Value=0)                    29   4.4  
SB_8834| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.4  
SB_40862| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_52392| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_11970| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_10667| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_5222| Best HMM Match : Ras (HMM E-Value=2.9e-09)                    28   5.8  
SB_56071| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_47610| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_26132| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score =  179 bits (435), Expect = 2e-45
 Identities = 95/196 (48%), Positives = 117/196 (59%), Gaps = 6/196 (3%)
 Frame = +2

Query: 83  MAVGDVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIA 262
           M  GD+K+  GL+ LN +L E+SY+ GY PSQAD  VFE +  AP A+LPH LRWYN I 
Sbjct: 1   MGFGDLKSQAGLSALNTFLTERSYIEGYVPSQADAVVFEALKSAPPASLPHALRWYNHIV 60

Query: 263 SYT------PAERKTWSQGTSPLXXXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXX 424
           SY       P E+K+  +   P                     +DLFGS           
Sbjct: 61  SYGEGKQNFPGEKKS-VESFGPAGAASEQKPAPADDNDDDE--IDLFGSDDEEEEKEAAR 117

Query: 425 XXXXXLKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKL 604
                LKAY +KK+KK  +IAKS+I+LDVKPWDDETDM EME  VR+I+ +GLLWGASKL
Sbjct: 118 IRQERLKAYEEKKAKKKPVIAKSNIMLDVKPWDDETDMAEMEKLVRSIQADGLLWGASKL 177

Query: 605 VPVGYGINKLQIMCVI 652
           VP+ YGI KLQI  V+
Sbjct: 178 VPLAYGIKKLQITVVV 193


>SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 23/35 (65%), Positives = 25/35 (71%)
 Frame = +2

Query: 164 YTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASY 268
           Y PSQAD  VFE +  AP A+LPH LRWYN I SY
Sbjct: 2   YVPSQADAVVFEALKSAPPASLPHALRWYNHIVSY 36


>SB_42516| Best HMM Match : EF1_GNE (HMM E-Value=3.3e-05)
          Length = 416

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
 Frame = +2

Query: 440 LKAYADKKSKKPALIAKSS---ILLDVKPWDDETDMKEMEN-QVRTIEMEGLLWGASKLV 607
           +KA+A K  +KPA   K       +D+   DDE + +E    + + +         +KLV
Sbjct: 60  IKAFAKKPEEKPAAAKKEDDDDSDIDLFGSDDEEEAEEARQLREKRLAEYNAKKATTKLV 119

Query: 608 PVGYGINKLQIMCVI 652
            + YG+ KLQI CVI
Sbjct: 120 EIAYGLKKLQITCVI 134


>SB_17859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 99  TSPTAIVSFSVATFF*ITTRLGEKTCSPGDPLV 1
           T   AI +  + T F  +T++   +CSPGDPLV
Sbjct: 17  TPSIAIATHKLNTLFIPSTQMASNSCSPGDPLV 49


>SB_4378| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 114 PWAVL-TSPTAIVSFSVATFF*ITTRLGEKTCSPGDPLV 1
           PWA   T    +++F   T + +T      +CSPGDPLV
Sbjct: 7   PWACCHTRRVTVITFVHTTSY-LTIHSASNSCSPGDPLV 44


>SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1887

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -3

Query: 111  WAVLTSPTAIVSFSVATFF*ITTRLGEKTCSPGDPLV 1
            W++L S   + S     F      LG  +CSPGDPLV
Sbjct: 999  WSLLISRRGLRSMGAHVF---VVGLGSNSCSPGDPLV 1032


>SB_15649| Best HMM Match : EF1_GNE (HMM E-Value=0.025)
          Length = 301

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +2

Query: 599 KLVPVGYGINKLQIMCVI 652
           KLV + YG+ KLQI CVI
Sbjct: 2   KLVEIAYGLKKLQITCVI 19


>SB_42404| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 105 VLTSPTAIVSFSVATFF*ITTRLGEKTCSPGDPLV 1
           +L + T   S  V     + T  G  +CSPGDPLV
Sbjct: 19  ILRALTCYTSLQVLDLDALDTTQGSNSCSPGDPLV 53


>SB_55208| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 51 ITTRLGEKTCSPGDPLV 1
          I+  +G  +CSPGDPLV
Sbjct: 9  ISANIGSNSCSPGDPLV 25


>SB_25408| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1636

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +2

Query: 116 LNDLNQYLAEKSYVSGYTPSQADVQ-VFEQVGK 211
           +N L + L EKS+  GY+P+ +DVQ V + V K
Sbjct: 62  VNKLPKGLIEKSWNFGYSPNTSDVQTVMQNVAK 94


>SB_8834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 51 ITTRLGEKTCSPGDPLV 1
          I+  +G  +CSPGDPLV
Sbjct: 9  ISANIGSNSCSPGDPLV 25


>SB_40862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -3

Query: 84 IVSFSVATF-F*ITTRLGEKTCSPGDPLV 1
          ++S ++ T+ F I    G  +CSPGDPLV
Sbjct: 8  LISANILTYSFCIVEFPGSNSCSPGDPLV 36


>SB_52392| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -3

Query: 45 TRLGEKTCSPGDPLV 1
          T LG  +CSPGDPLV
Sbjct: 16 TILGSNSCSPGDPLV 30


>SB_11970| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -3

Query: 48 TTRLGEKTCSPGDPLV 1
          T R G  +CSPGDPLV
Sbjct: 8  TERPGSNSCSPGDPLV 23


>SB_10667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 188

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -3

Query: 45  TRLGEKTCSPGDPLV 1
           TR G  +CSPGDPLV
Sbjct: 61  TRGGSNSCSPGDPLV 75


>SB_5222| Best HMM Match : Ras (HMM E-Value=2.9e-09)
          Length = 181

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -3

Query: 51  ITTRLGEKTCSPGDPLV 1
           I  R G  +CSPGDPLV
Sbjct: 66  IENRRGSNSCSPGDPLV 82


>SB_56071| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 856

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -1

Query: 302 CPETKFCVQPECMKQFDYTIVVRGEG*RPAPCQLAQILEHQLEKECIQ 159
           CP       PE    F  T+ +  EG     CQ+  IL H+++ EC++
Sbjct: 568 CPPFGISSAPEV---FQRTMSMTLEGLEGVVCQMDDILIHEVQDECVR 612


>SB_47610| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 45 TRLGEKTCSPGDPLV 1
          T+ G  +CSPGDPLV
Sbjct: 2  TKKGSNSCSPGDPLV 16


>SB_26132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/29 (41%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = -3

Query: 84  IVSFSVATF-F*ITTRLGEKTCSPGDPLV 1
           ++++++ TF F   + +G  +CSPGDPLV
Sbjct: 50  VLAWALHTFGFFCYSFIGSNSCSPGDPLV 78


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,756,153
Number of Sequences: 59808
Number of extensions: 383855
Number of successful extensions: 2326
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 2263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2325
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)