Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1012
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    29   0.52 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.4  
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    25   6.4  
SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomy...    25   8.5  

>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +3

Query: 36  RGLEVLFTQSVCALIIVIHFR*LYLK*NLPREATTPPPSRLSPATTI 176
           + L  LF  S+C +I+V+ +R L     LP EA     ++L P T I
Sbjct: 65  KSLLFLFFVSICVVILVVRYRYLNKYARLPHEAPI-KEAKLGPDTNI 110


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 355 SIPGVSLSEGQCGAPVSTSRPHIFTQSSVFSFSNRLTGESST 230
           S+   S S     AP STS  ++ + S V S S+  +  SST
Sbjct: 188 SVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSST 229


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 91  CITIIKAHTDCVKRTSRPR 35
           C++ I  HTD VKR S P+
Sbjct: 115 CLSTIGEHTDYVKRVSIPK 133


>SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 357

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = -3

Query: 202 RN*LRVYVTIVVAGLRRE 149
           RN LR+Y TIV AG+R E
Sbjct: 101 RNLLRLYETIVDAGVRSE 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,317,504
Number of Sequences: 5004
Number of extensions: 44615
Number of successful extensions: 95
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)