Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1012
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1044 - 25649296-25649730                                         31   0.93 
11_01_0491 + 3789264-3789596,3789999-3790071,3790260-3790327,379...    28   5.0  
11_01_0340 + 2534998-2535660                                           27   8.7  

>12_02_1044 - 25649296-25649730
          Length = 144

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -3

Query: 346 GVSLSEGQCGAPVSTSRPHIFTQSSVFSFSNRLTGESSTWEPFIR 212
           GVSLS  +   PV  SR H  T+  V   S    G +++W P +R
Sbjct: 99  GVSLSVAEVMPPVKASRAHGCTECGVEFDSASTYGGTTSWAPRLR 143


>11_01_0491 +
           3789264-3789596,3789999-3790071,3790260-3790327,
           3790754-3790842,3791544-3791715,3791839-3791907,
           3792129-3792296,3792666-3792833,3792916-3793011
          Length = 411

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -3

Query: 187 VYVTIVVAGLRREGGGVVASRGR 119
           V V +VVA +R +GGG+  +RGR
Sbjct: 4   VVVVVVVAVMRGDGGGLKGARGR 26


>11_01_0340 + 2534998-2535660
          Length = 220

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 292 VAARLILVPRTDPPRGSLLEYLPSPCQCVI 381
           +AA  +L+P   PPR  +L  LP+PC  ++
Sbjct: 1   MAALPVLLPT--PPRSKMLPLLPTPCLVIL 28


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,317,119
Number of Sequences: 37544
Number of extensions: 292303
Number of successful extensions: 681
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)