Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1012
         (600 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19614| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_27714| Best HMM Match : AA_permease (HMM E-Value=0.29)              27   8.8  

>SB_19614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 603

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 343 VSLSEGQCGAPVSTSRPHIFTQSSVFSFSNRLTGESSTWE 224
           VS+ EG C   +S  R H+F+Q+  F F      +  +WE
Sbjct: 268 VSVGEGSCEGKLSGKRGHLFSQNYPFLFPR---NKECSWE 304


>SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 464 YLEYYHY*TGIIKNILGVNLNIYY 535
           Y  ++HY TGI  NIL + L+ YY
Sbjct: 326 YHHHHHYITGIAINILPLLLSTYY 349


>SB_27714| Best HMM Match : AA_permease (HMM E-Value=0.29)
          Length = 420

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 309 YQPRGHIFLLSHLFFPLATG*LA 241
           Y+P  H F +  +FFP ATG LA
Sbjct: 363 YRPGEHFFSVFAVFFPAATGILA 385


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,397,621
Number of Sequences: 59808
Number of extensions: 330195
Number of successful extensions: 605
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)