Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1012
         (600 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g14790.1 68414.m01768 RNA-dependent RNA polymerase, putative ...    31   0.58 
At4g20140.1 68417.m02947 leucine-rich repeat transmembrane prote...    29   1.8  

>At1g14790.1 68414.m01768 RNA-dependent RNA polymerase, putative
           similar to RNA-directed RNA polymerase GB:CAA09697
           GI:4138282 [Nicotiana tabacum]
          Length = 1107

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 18/72 (25%), Positives = 30/72 (41%)
 Frame = -3

Query: 295 PHIFTQSSVFSFSNRLTGESSTWEPFIRDSNRN*LRVYVTIVVAGLRREGGGVVASRGRF 116
           P+  +   V  F  RLTG  + +   +R   +   RVY  +     R     + A+  R 
Sbjct: 11  PNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTRLIITAAAERL 70

Query: 115 YFKYNYLKCITI 80
           Y+  +YLK   +
Sbjct: 71  YYGRSYLKAFEV 82


>At4g20140.1 68417.m02947 leucine-rich repeat transmembrane protein
           kinase, putative Cf-2.2, Lycopersicon pimpinellifolium,
           PIR:T10515
          Length = 1249

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -3

Query: 343 VSLSEGQCGAPVSTSRPHIFTQSSVFSFSNRLTGE 239
           + LS      P+ T+  ++ +  S+F FSN+LTGE
Sbjct: 100 LDLSSNNLVGPIPTALSNLTSLESLFLFSNQLTGE 134


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,133,280
Number of Sequences: 28952
Number of extensions: 229623
Number of successful extensions: 480
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)