Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1011
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    28   0.75 
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    27   1.3  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    26   3.0  
SPCC1020.07 |||haloacid dehalogenase-like hydrolase|Schizosaccha...    26   3.0  
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    26   4.0  
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom...    25   5.3  
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    25   7.0  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    25   9.2  

>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 28.3 bits (60), Expect = 0.75
 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
 Frame = +2

Query: 164 TVNFLRELTKEPEYHNVKWGIAGRSEKKLNI-LLKELSELKIRTSSIVVIKCDI---NNQ 331
           T+N LR L K  +Y N++  I  RS    N+  L  +   K+R  ++ V+K  +     +
Sbjct: 638 TMNCLRVLEKVCKYSNIRKEIIARSNLHENLKKLLAIPHDKLRLYALKVLKLSVPFLGLK 697

Query: 332 TELRNATGRTKILINCT 382
            +  N +  T+I +NC+
Sbjct: 698 WKQANMSIITQIYLNCS 714


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1185

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -1

Query: 279 NSESSLSKMLSFFSDRPAIPHFTL*YSGSLVNSLKKFTVDFPVNPV 142
           N  ++LS  +        +   T+ YSG ++N  KK+ +D+ VN V
Sbjct: 688 NDVNNLSLGIDAAKRAGGVVEATMCYSGDMLNPKKKYNLDYYVNLV 733


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = -1

Query: 279 NSESSLSKMLSFFSDRPAIPHFTL*YSGSLVNSLKKFTVDFPVNPVAPNTSKSNFS 112
           +S SSL  + S  +  P +P      S S  N     T   P+NP AP T + + S
Sbjct: 191 SSFSSLPLVSSKPTGTPFVPKSPPSSSPSTTNVSNASTSSAPINPRAPQTRRESIS 246


>SPCC1020.07 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 236

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 25/126 (19%), Positives = 50/126 (39%)
 Frame = +2

Query: 119 LDLLVLGATGFTGKSTVNFLRELTKEPEYHNVKWGIAGRSEKKLNILLKELSELKIRTSS 298
           +D L++       KST   L+   K P    VK  + GR+ K+ + +  + S + +    
Sbjct: 10  MDGLLVDTESIYTKSTNIILKRYNKGPFSMEVKAKMMGRTSKEASRIFLDWSGIDLTCEE 69

Query: 299 IVVIKCDINNQTELRNATGRTKILINCTGPHSILGEAVIKSCIETRTHYVDISAEIPQIF 478
            + ++ +   Q EL   T     ++N       L   +  +      ++   SA +  +F
Sbjct: 70  YIALQRE--TQAELWRHTKPLPGVMNLLSKLKSLNIPIALATSSDTHNFEKKSAHLSHLF 127

Query: 479 NAFRNN 496
           + F  N
Sbjct: 128 DHFDGN 133


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 395 ILGEAVIKSCIETRTHYVDIS-AEIPQIFNAFRNNHNAAEEGNVL 526
           ILG A+ +S  E  THY +++ +            H  A EG++L
Sbjct: 296 ILGVAINQSINEDMTHYAEVAVSTYESCIEIIEKFHAIAYEGSIL 340


>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -1

Query: 339 NSV*LLMSHFMTTMLDVLIF-NSESSLSKMLSFFS 238
           NSV  L+S    ++ +V  F N+ S LSK LSFFS
Sbjct: 86  NSVFQLLSKIRNSVPNVSAFRNNLSILSKELSFFS 120


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 164 TVNFLRELTK-EPEYHNVKWGIAGRSEKKLNILLKELSEL 280
           T   LR L +   +  N+ W ++GRS+K +   + ++SEL
Sbjct: 599 TDRLLRTLKRLASDSRNIVWILSGRSQKFMEEWMGDISEL 638


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = +2

Query: 146 GFTGKSTV---NFLRELTKEPEYHNVKWGIAGRSEKKLNILLKELSELKIRTSS 298
           GF GKS     N +RE  +E + H +   +  RSE  + + +  L    IR  +
Sbjct: 86  GFPGKSAEELKNKIREQIQERDIHEIDSLVQSRSETTIVVNMTPLFARNIRVQN 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,051,392
Number of Sequences: 5004
Number of extensions: 37507
Number of successful extensions: 108
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)