Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1011
         (528 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1142 + 24287674-24288357,24291451-24292137                       50   2e-06
03_05_0148 - 21275375-21275540,21275621-21275733,21276394-21276480     29   1.7  
10_08_0488 + 18258178-18258228,18258864-18258926,18259006-182591...    28   4.0  
08_01_1077 - 11027732-11027839,11028346-11028477,11029722-110298...    28   4.0  
06_03_0315 + 19486006-19486250,19486346-19487281,19488823-194890...    28   5.3  
05_05_0318 + 24052022-24053858,24053935-24054132,24054363-24055351     27   7.1  
08_02_0969 - 23126389-23126670,23126764-23126947,23127017-231278...    27   9.3  

>07_03_1142 + 24287674-24288357,24291451-24292137
          Length = 456

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 30/138 (21%), Positives = 57/138 (41%)
 Frame = +2

Query: 113 EKLDLLVLGATGFTGKSTVNFLRELTKEPEYHNVKWGIAGRSEKKLNILLKELSELKIRT 292
           E  D+++ GA+GFTG+  +    +             +AGRS  ++   L+  +      
Sbjct: 13  EVFDVVIFGASGFTGRYVIREALKFLPPSSSPLRSLALAGRSRDRVAAALRWAAGPGGAA 72

Query: 293 SSIVVIKCDINNQTELRNATGRTKILINCTGPHSILGEAVIKSCIETRTHYVDISAEIPQ 472
             + ++  D ++   L     R +++++C GP  + G  V  +C       +DIS E   
Sbjct: 73  PDLPILVADASDPASLAALAARARVVLSCAGPFRLHGRQVAAACAAAGADCLDISGEPEF 132

Query: 473 IFNAFRNNHNAAEEGNVL 526
           +       H AA +   L
Sbjct: 133 MERVEAEFHEAAAKNGSL 150


>03_05_0148 - 21275375-21275540,21275621-21275733,21276394-21276480
          Length = 121

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/56 (23%), Positives = 26/56 (46%)
 Frame = +2

Query: 257 LLKELSELKIRTSSIVVIKCDINNQTELRNATGRTKILINCTGPHSILGEAVIKSC 424
           +LKEL ELK +T   ++   +   + E  +     ++L +C  P     + ++  C
Sbjct: 32  ILKELDELKTKTKKAIIEDVEKVKRLENEDRNALNRLLTSCGMPRGAFRDKLVFGC 87


>10_08_0488 +
           18258178-18258228,18258864-18258926,18259006-18259143,
           18259355-18259462,18259691-18259777,18259911-18259961,
           18260058-18260129,18260323-18260442,18260695-18260742,
           18261060-18261239,18261365-18261454,18261619-18261951
          Length = 446

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 113 EKLDLLVLGATGFTGKSTVNFLRELTKEPEYH 208
           E++ + VLGA+G+TG   V   R L   P++H
Sbjct: 68  EEVQIAVLGASGYTGAEIV---RLLANHPQFH 96


>08_01_1077 -
           11027732-11027839,11028346-11028477,11029722-11029802,
           11029911-11030063,11030167-11030281,11030282-11030927,
           11031409-11031613,11031696-11031758
          Length = 500

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
 Frame = +2

Query: 167 VNFLRELTKEPEYHNV------KWGIAGRSEKKLNILLKELSELKIRTSSIVVIKCDINN 328
           V F RE+ K P Y  +      +W ++ +  + L  LL+   ELK  T  + V + D N 
Sbjct: 344 VTFGREIQKFPMYGKLTSISLGEWCLSDKFSR-LFCLLRHSPELKELTLKLEVERQDHNG 402

Query: 329 QTELRNATGRT 361
           + E+R   GR+
Sbjct: 403 EDEIRLMVGRS 413


>06_03_0315 +
           19486006-19486250,19486346-19487281,19488823-19489019,
           19489044-19489246
          Length = 526

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 113 PSLNSKYCCLTNCRKFAKYKNVCTFSASCRIPAARGI 3
           P +   + C  N R  A Y N+  F +SCR+P   G+
Sbjct: 50  PFVPDVFDCRRNGRPDAAYLNLRWFPSSCRLPRFDGV 86


>05_05_0318 + 24052022-24053858,24053935-24054132,24054363-24055351
          Length = 1007

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +2

Query: 248  LNILLKELSELKIRTSSIVVIKC-DINNQTELRNATGRTKILINCTGPHSILGEAVIKSC 424
            +N LL EL+EL     ++V+  C  +N   E   AT +   + NC+   S+       SC
Sbjct: 875  INPLLDELNEL-FALKNLVIADCVSLNTFPEKLPATLKKLEIFNCSNLASLPACLQEASC 933

Query: 425  IETRT 439
            ++T T
Sbjct: 934  LKTMT 938


>08_02_0969 -
           23126389-23126670,23126764-23126947,23127017-23127834,
           23127953-23128642
          Length = 657

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 170 NFLRELTKEPEYHNVKWGIAGRSEKK 247
           NF RE T  P   N  +G+ GRS+ +
Sbjct: 355 NFRRERTHSPRARNRDYGVNGRSDSR 380


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,409,813
Number of Sequences: 37544
Number of extensions: 204948
Number of successful extensions: 513
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)