Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG1011
(528 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4639| Best HMM Match : Saccharop_dh (HMM E-Value=3e-06) 50 1e-06
SB_38326| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.021
SB_26762| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.44
SB_31106| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_32676| Best HMM Match : adh_short (HMM E-Value=1.2e-05) 29 1.8
SB_22334| Best HMM Match : VAR1 (HMM E-Value=1.9) 29 1.8
SB_9111| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_52722| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_25921| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_21513| Best HMM Match : Extensin_2 (HMM E-Value=4) 29 3.1
SB_12706| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_56684| Best HMM Match : CsrA (HMM E-Value=1.1) 28 4.1
SB_29126| Best HMM Match : FUN14 (HMM E-Value=1.8) 28 4.1
SB_6162| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_32160| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_21233| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_19315| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_14525| Best HMM Match : Phospholip_A2_1 (HMM E-Value=2.2) 28 4.1
SB_55329| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_49504| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_44084| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_59324| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_5779| Best HMM Match : Pkinase (HMM E-Value=1.8e-19) 27 7.2
SB_52302| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_50042| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_46352| Best HMM Match : L71 (HMM E-Value=0.19) 27 9.6
SB_25764| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
>SB_4639| Best HMM Match : Saccharop_dh (HMM E-Value=3e-06)
Length = 268
Score = 50.0 bits (114), Expect = 1e-06
Identities = 35/134 (26%), Positives = 68/134 (50%), Gaps = 1/134 (0%)
Frame = +2
Query: 125 LLVLGATGFTGKSTVNFLRELTKEPEYHNVKWGIAGRSEKKLNILLKELSELKIRTSSIV 304
++V GA+GFTG+ RE+ K + KW +AGR++ KL +L+E +E ++
Sbjct: 9 IVVFGASGFTGQFVA---REVAKNSK-GKFKWAVAGRNKAKLEKVLREAAE---EIVLLI 61
Query: 305 VIKCDINNQTELRNATGRTKILINCTGPHSILGEAVIKSCIETRTHYVDISAEIPQIFNA 484
+ C L ++ + +++ + GE V+K+ +E H++D+S E P+
Sbjct: 62 ALLC-----YGLIDSIAHSPVVLWFDRQYRFYGEPVVKAAVENGCHHLDVSGE-PEFLET 115
Query: 485 FR-NNHNAAEEGNV 523
+ H+ A++ V
Sbjct: 116 MQLKYHDLAKQKGV 129
>SB_38326| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 104
Score = 35.9 bits (79), Expect = 0.021
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +3
Query: 3 DPPGCRNSARGTKSTHVFIFCKFPAVS*TAIF 98
DPPGCRNS R T + +F K P + T F
Sbjct: 17 DPPGCRNSIRSTTTITIFTIIKTPMTTTTTAF 48
>SB_26762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 31.5 bits (68), Expect = 0.44
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -1
Query: 45 YF*CLVPNSCSPGDP 1
+F CL+ NSCSPGDP
Sbjct: 66 HFPCLISNSCSPGDP 80
>SB_31106| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 37
Score = 29.9 bits (64), Expect = 1.4
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 290 TSSIVVIKCDINNQTELRNATGRTKILINCTGP 388
T +I +++++ L RTKI++NC GP
Sbjct: 5 THEASIIIANVDDEESLNRMCSRTKIVLNCVGP 37
>SB_32676| Best HMM Match : adh_short (HMM E-Value=1.2e-05)
Length = 201
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +2
Query: 236 SEKKLNILLKELSELKIRTSSIVVIKCDINNQTELRNATGRTK 364
+EK N LK LSE ++ IKCD+ +Q ++ A RTK
Sbjct: 38 NEKTGNETLKLLSE-NYSKHRVLFIKCDVTSQPQMEAAFQRTK 79
>SB_22334| Best HMM Match : VAR1 (HMM E-Value=1.9)
Length = 525
Score = 29.5 bits (63), Expect = 1.8
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = -1
Query: 357 LPVAFLNSV*LLMSHFMTTMLDVLIFNSESSLSKMLS-FFSDRPAIPHFTL*YSGSLVNS 181
+PV+FL S+ + S T + LI+ +S++K LS SD+ L Y +L S
Sbjct: 63 IPVSFL-SILRIYSRLYITTSNALIYTVSASINKRLSTLSSDKETFDQAALPYQKALDES 121
Query: 180 LKKFTVDFPVN 148
+T+ + N
Sbjct: 122 GYNYTLHYEPN 132
>SB_9111| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = -1
Query: 48 VYF*CLVPNSCSPGDP 1
V F C V NSCSPGDP
Sbjct: 21 VPFYCYVSNSCSPGDP 36
>SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1769
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +2
Query: 125 LLVLGATGFTGKSTVNFLRELTKEPEYHNVKWGIAGRSEKKLNILLKEL 271
L ++ G TGK+++ ++ +Y + +AG SE+ NI L E+
Sbjct: 372 LTLISGLGGTGKTSIALEHVWRQKEQYSAGVYWLAGESERDFNITLTEM 420
>SB_52722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -1
Query: 51 RVYF*CLVPNSCSPGDP 1
+V F C + NSCSPGDP
Sbjct: 4 KVGFTCALSNSCSPGDP 20
>SB_25921| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -1
Query: 51 RVYF*CLVPNSCSPGDP 1
R+ F L+ NSCSPGDP
Sbjct: 31 RILFLDLISNSCSPGDP 47
>SB_21513| Best HMM Match : Extensin_2 (HMM E-Value=4)
Length = 484
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +2
Query: 158 KSTVNFLRELTKEPEYHNVKWGIAGRSEKKLNILLKELSELKIRTSSIVV 307
++ +NF+R+ T +P + N+ W I + + N KE L+ +V
Sbjct: 72 QNMLNFIRDKTADPYFWNLVWFIGNHAIELDNCAQKEADHLRCNNLKDIV 121
>SB_12706| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +2
Query: 158 KSTVNFLRELTKEPEYHNVKWGIAGRSEKKLNILLKELSELKIRTSSIVV 307
++ +NF+R+ T +P + N+ W I + + N KE L+ +V
Sbjct: 107 QNMLNFIRDKTADPYFWNLVWFIGNHAIELDNCAQKEADHLRCNNLKDIV 156
>SB_56684| Best HMM Match : CsrA (HMM E-Value=1.1)
Length = 301
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +2
Query: 152 TGKSTVNFLRELTKEPEYHNVKWGIAGRSEKKLNIL--LKELSELKIRTSSIVVIKCDIN 325
+G +N +R T E GI S +L +L ++ ++ R +S + ++
Sbjct: 143 SGIDNINPMRVETLRAEDSRASCGIENISPMRLEVLRDTRDSPDVHSRVTSSIEVEASRL 202
Query: 326 NQTELRNATGRTKI 367
+ RNA G+TK+
Sbjct: 203 EDADNRNAQGKTKL 216
>SB_29126| Best HMM Match : FUN14 (HMM E-Value=1.8)
Length = 204
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -3
Query: 79 TAGNLQNIKTCVLLVPRAEFLQPGGS 2
TAG L + ++ V + EFLQPGGS
Sbjct: 64 TAGFLSPLLVGIVTVNKIEFLQPGGS 89
>SB_6162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1808
Score = 28.3 bits (60), Expect = 4.1
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +3
Query: 318 TSTIKLN*GTPQVERKF**IALVLIVYWVKL-SLRAASRQGLTTLIYQPKYHKSLTHFVI 494
+ST+K+N G PQ R + V++ V SLRA LT L P+ SL +F++
Sbjct: 1527 SSTLKINGGIPQGTRLGPVLFAVMVNSLVSSWSLRAKYVDDLTVLEVLPRNSPSLLNFIV 1586
>SB_32160| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 350
Score = 28.3 bits (60), Expect = 4.1
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +3
Query: 318 TSTIKLN*GTPQVERKF**IALVLIVYWVKL-SLRAASRQGLTTLIYQPKYHKSLTHFVI 494
+ST+K+N G PQ R + V++ V SLRA LT L P+ SL +F++
Sbjct: 69 SSTLKINGGIPQGTRLGPVLFAVMVNSLVSSWSLRAKYVDDLTVLEVLPRNSPSLLNFIV 128
>SB_21233| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = -1
Query: 36 CLVPNSCSPGDP 1
C V NSCSPGDP
Sbjct: 32 CTVSNSCSPGDP 43
>SB_19315| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -1
Query: 45 YF*CLVPNSCSPGDP 1
YF L NSCSPGDP
Sbjct: 7 YFIMLASNSCSPGDP 21
>SB_14525| Best HMM Match : Phospholip_A2_1 (HMM E-Value=2.2)
Length = 462
Score = 28.3 bits (60), Expect = 4.1
Identities = 25/92 (27%), Positives = 43/92 (46%)
Frame = +2
Query: 185 LTKEPEYHNVKWGIAGRSEKKLNILLKELSELKIRTSSIVVIKCDINNQTELRNATGRTK 364
+ KE + HN+ +GR + K + + S++ +T I+ +K N ++ ++
Sbjct: 200 MRKENKSHNMADDSSGRKDTKSATICSKKSDITEQTIDIMCVK--DNPCGHFVHSDNKSP 257
Query: 365 ILINCTGPHSILGEAVIKSCIETRTHYVDISA 460
I + G S L E I S T YVD+SA
Sbjct: 258 INM---GLKSDLKEKCISSSYTPITQYVDVSA 286
>SB_55329| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 806
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +2
Query: 308 IKCDINNQTELRNATGRTKILINCTGPHSILGEAVIKSCIETRT 439
IK I TE + +T +L+N PH+ ++ +C T T
Sbjct: 50 IKDMIKQYTEAPSIAPKTALLVNTASPHTAHRAFLVTTCASTST 93
>SB_49504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = -3
Query: 52 TCVLLVPRAEFLQPGGS 2
TC L R EFLQPGGS
Sbjct: 8 TCALPQDRIEFLQPGGS 24
>SB_44084| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 48 VYF*CLVPNSCSPGDP 1
VY+ + NSCSPGDP
Sbjct: 29 VYYRSITSNSCSPGDP 44
>SB_59324| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = -1
Query: 36 CLVPNSCSPGDP 1
CL NSCSPGDP
Sbjct: 13 CLRSNSCSPGDP 24
>SB_5779| Best HMM Match : Pkinase (HMM E-Value=1.8e-19)
Length = 284
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 149 FTGKSTVNFLRELTKEPEYHNVKWGIAGRSEKKLNILLKELSE-LKIRTSSIVVIKCD 319
FT K + F +E+ + YH + +A R K N+LL + SE L ++ + K D
Sbjct: 16 FTEKEAMKFTKEIA-QALYHCHSFNVAHRDLKPENLLLVDKSENLVVKLADFGFAKVD 72
>SB_52302| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 140
Score = 27.1 bits (57), Expect = 9.6
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -1
Query: 36 CLVPNSCSPGDP 1
C NSCSPGDP
Sbjct: 14 CFTSNSCSPGDP 25
>SB_50042| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 144
Score = 27.1 bits (57), Expect = 9.6
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -1
Query: 36 CLVPNSCSPGDP 1
C+ NSCSPGDP
Sbjct: 18 CMKSNSCSPGDP 29
>SB_46352| Best HMM Match : L71 (HMM E-Value=0.19)
Length = 179
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = +3
Query: 3 DPPGCRNSA--RGTKSTHVFIFCKF 71
DPPGCRNS +G K + + KF
Sbjct: 17 DPPGCRNSIKDKGEKESMEIVHVKF 41
>SB_25764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 27.1 bits (57), Expect = 9.6
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -1
Query: 36 CLVPNSCSPGDP 1
C NSCSPGDP
Sbjct: 9 CFASNSCSPGDP 20
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,946,455
Number of Sequences: 59808
Number of extensions: 261110
Number of successful extensions: 2148
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 2107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2144
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -