Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1011
         (528 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    26   0.27 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   1.9  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   4.5  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   5.9  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   5.9  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 25.8 bits (54), Expect = 0.27
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +2

Query: 269 LSELKIRTSSIVVIKCDINNQTEL 340
           + ELK +   +V ++CD++NQ ++
Sbjct: 48  VEELKSKPGKLVPLQCDLSNQNDI 71


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 315 HFMTTMLDVLIFNSESSLSKMLSFFSDRP 229
           HF   M  + + N+E +L   +  FS+RP
Sbjct: 461 HFCRQMYAMKVNNAEYALLTAIVIFSERP 489


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 12/55 (21%), Positives = 27/55 (49%)
 Frame = -1

Query: 384 PVQFIKIFVLPVAFLNSV*LLMSHFMTTMLDVLIFNSESSLSKMLSFFSDRPAIP 220
           P+ ++   +LP   +NSV LL+ +  +   + +     + LS  +   + R ++P
Sbjct: 213 PMFYVFNLILPCILINSVALLVFYVPSESGEKVTLGISALLSMTVFLMTIRESLP 267


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -1

Query: 255 MLSFFSDRPAIPHFTL 208
           +L ++SDRP + H  +
Sbjct: 132 ILHYYSDRPGLEHIVI 147


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -1

Query: 255 MLSFFSDRPAIPHFTL 208
           +L ++SDRP + H  +
Sbjct: 132 ILHYYSDRPGLEHIVI 147


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,529
Number of Sequences: 438
Number of extensions: 2382
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)