Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1010
         (628 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10783| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   2e-04
SB_54947| Best HMM Match : rve (HMM E-Value=2.3e-31)                   31   1.0  
SB_12753| Best HMM Match : M (HMM E-Value=0.0006)                      28   5.4  
SB_47883| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-14)          28   7.1  
SB_33785| Best HMM Match : DUF23 (HMM E-Value=8.2e-36)                 27   9.4  

>SB_10783| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 19/41 (46%), Positives = 26/41 (63%)
 Frame = +2

Query: 506 FWTIEYYQKYFDVQTSEVVERIISSVLPQKVSRNYFDEKIK 628
           FWT EYYQ +FDV T +V  RI+ S++P    RN+    I+
Sbjct: 86  FWTFEYYQAFFDVDTYQVGHRILGSMVP-AYKRNFLISHIR 125


>SB_54947| Best HMM Match : rve (HMM E-Value=2.3e-31)
          Length = 1283

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = -1

Query: 112 LCFSIYGLLKFTKVAFESLVGTIPSFFSYVS 20
           LCFSI+ +L  T++ F  +V ++ ++F +VS
Sbjct: 186 LCFSIWQMLVDTRIPFVVIVASLDTWFEFVS 216


>SB_12753| Best HMM Match : M (HMM E-Value=0.0006)
          Length = 304

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/26 (42%), Positives = 21/26 (80%)
 Frame = +3

Query: 429 LIKITPLTKRPELFQKQRLNLNRITT 506
           L +IT +TK+PE F+K+++  ++IT+
Sbjct: 88  LEEITHVTKKPEFFEKEKILQDQITS 113


>SB_47883| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-14)
          Length = 265

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -1

Query: 229 FTVQYWLV-KMLTSYIKFQVIAKV*KSILFQTKKRNFTIILC 107
           +TV+Y L    L SY   + + K  +++  +TK  N+TI LC
Sbjct: 185 YTVEYSLTGDQLQSYQDGKGVVKGTRAMTTKTKSHNYTIFLC 226


>SB_33785| Best HMM Match : DUF23 (HMM E-Value=8.2e-36)
          Length = 338

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 398 VLPLHQYAQFAHCVPGNSPGNLTTRP 321
           VL  +Q  Q A+ +P N P NL +RP
Sbjct: 132 VLRYYQETQVANVLPWNLPSNLVSRP 157


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,703,455
Number of Sequences: 59808
Number of extensions: 338582
Number of successful extensions: 721
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)