Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1010
         (628 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27490.1 68418.m03286 integral membrane Yip1 family protein c...    37   0.010
At3g05280.1 68416.m00576 integral membrane Yip1 family protein c...    35   0.038
At5g05890.1 68418.m00649 UDP-glucoronosyl/UDP-glucosyl transfera...    30   1.1  
At3g62380.1 68416.m07007 hypothetical protein weak similarity to...    30   1.1  
At4g25930.1 68417.m03729 hypothetical protein contains Pfam prof...    30   1.4  
At2g18180.1 68415.m02115 SEC14 cytosolic factor, putative / phos...    27   7.7  
At1g04700.1 68414.m00467 protein kinase family protein low simil...    27   7.7  

>At5g27490.1 68418.m03286 integral membrane Yip1 family protein
           contains Pfam domain, PF04893: Yip1 domain
          Length = 282

 Score = 37.1 bits (82), Expect = 0.010
 Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
 Frame = +2

Query: 485 QPQSN---HNFWTIEYYQKYFDVQTSEVVERIISSVLPQKVSRNYFDEK 622
           +PQS+   H F T+  Y+ YFDV TS+VVER+  S+ P    R  F EK
Sbjct: 74  EPQSSGWLHRF-TVGAYKPYFDVDTSDVVERLKESLFP---FRGTFTEK 118


>At3g05280.1 68416.m00576 integral membrane Yip1 family protein
           contains Pfam domain, PF04893: Yip1 domain
          Length = 281

 Score = 35.1 bits (77), Expect = 0.038
 Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
 Frame = +2

Query: 485 QPQSN---HNFWTIEYYQKYFDVQTSEVVERIISSVLPQKVSRNYFDEK 622
           +PQS    H F T+  Y+ +FDV TS+VVER+  S+ P    R  F EK
Sbjct: 73  EPQSGGWLHKF-TVGAYKPFFDVDTSDVVERLKESLFP---FRGTFTEK 117


>At5g05890.1 68418.m00649 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 455

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = -2

Query: 213 GLSKC*RRTLNSKLLLKYKNRYCFRPRNETL 121
           GLS+  +RT N+KLLL   NR C  P  E L
Sbjct: 63  GLSETEKRTNNTKLLLTLLNRNCESPFRECL 93


>At3g62380.1 68416.m07007 hypothetical protein weak similarity to S
           locus F-box (SLF)-S2 protein [Antirrhinum hispanicum]
           GI:13161526
          Length = 325

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 168 AITWNLMYDVNILTSQYCTVKFSKICLISFF 260
           ++ W  M+ VNIL++      F K+CL +++
Sbjct: 261 SVKWEKMFSVNILSTNCLDANFWKLCLAAYY 291


>At4g25930.1 68417.m03729 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 434

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = -3

Query: 515 LSRSCDSIEVESLLLEQLRAFRQRSNFD*KYYYYCIDLYVLPLHQYAQFAHCVPGNSPGN 336
           L R+ + +E    +  Q   FR   +++ KY YY  D+  L +      A C+  +S  +
Sbjct: 15  LMRNHNKVETLVHMASQFMVFRAEESWEEKYVYYTEDIGDLCIFLGHSEAFCIQASSGSS 74

Query: 335 LT 330
           LT
Sbjct: 75  LT 76


>At2g18180.1 68415.m02115 SEC14 cytosolic factor, putative /
           phosphoglyceride transfer protein, putative contains
           Pfam PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
           CRAL/TRIO, N-terminussimilar to phosphatidylinositol
           transfer-like protein IV (GI:14486707) [Lotus
           japonicus];
          Length = 558

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -3

Query: 287 NVFLNIILLEKRNQTNFRKFHCTILAC 207
           NV L++ +LE+ N  +F+K  C+ L+C
Sbjct: 4   NVDLDVCVLERPNVCSFKKRSCSKLSC 30


>At1g04700.1 68414.m00467 protein kinase family protein low
           similarity to EDR1 [Arabidopsis thaliana] GI:11127925;
           contains Pfam profile: PF00069 Eukaryotic protein kinase
           domain
          Length = 1042

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +3

Query: 417 IVIFLIKITPLTKRPELFQKQRLNLNRIT 503
           I +FL+  T  ++ P++F ++ +N+NR T
Sbjct: 216 IRVFLVPSTESSESPKIFHERNMNINRNT 244


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,390,514
Number of Sequences: 28952
Number of extensions: 230805
Number of successful extensions: 547
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)