Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1009
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po...    27   2.3  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    26   4.0  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   5.3  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    25   5.3  
SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr 1|...    25   7.0  

>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 380 RSVWTKYDASFEDWKLPCNT 321
           R +W+KY +SF D  LP N+
Sbjct: 237 REIWSKYTSSFGDLCLPDNS 256


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 252 LEQFRIHLYLDITKTQKTHF*NNHFYTDYDCV 157
           L Q  I   LD+  ++KTHF  NH      C+
Sbjct: 49  LNQHSISSLLDVILSKKTHFDKNHVQLLIKCL 80


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +1

Query: 136 SNEKIHNY-TIVVRIEVIISKMSFLCFGYVEI*MNPKLF 249
           S++KIH + T  V+I V  +KMS+    YVE+    K++
Sbjct: 670 SDDKIHLHKTNGVKISVPSAKMSYKDLDYVELMTGKKVY 708


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 323 CYKAASNLQNWHHTLSILI*PEY-LLYQHVFIS 418
           C+K    ++ W H LS+ +   Y LLY ++ +S
Sbjct: 4   CFKKYVKMRQWPHVLSLRVYASYFLLYNNLPLS 36


>SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -1

Query: 180 FYTDYDCVVMYFLIRSVP*WHFIYYKPERRIKKFK*ISRGYLS 52
           FY+DY  ++  F++   P   F+     +  K+ K  S+GY+S
Sbjct: 2   FYSDYLKLLKIFVVGVFPCTLFVNAPHGKLAKQSKLFSKGYIS 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,193,045
Number of Sequences: 5004
Number of extensions: 44818
Number of successful extensions: 78
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)