Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1009
         (528 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1112 - 27706813-27707175,27707225-27707299,27707515-277076...    27   7.1  

>06_03_1112 -
           27706813-27707175,27707225-27707299,27707515-27707665,
           27707953-27708190,27708280-27708490,27708565-27708680,
           27708805-27708847,27709817-27709859,27709941-27710056
          Length = 451

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/16 (62%), Positives = 11/16 (68%), Gaps = 1/16 (6%)
 Frame = -2

Query: 62  GICH-THWRCQDIGCL 18
           G CH T W+C D GCL
Sbjct: 326 GFCHPTTWKCYDQGCL 341


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,443,394
Number of Sequences: 37544
Number of extensions: 224929
Number of successful extensions: 312
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)