Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1009
         (528 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35638| Best HMM Match : Upf2 (HMM E-Value=2.1e-17)                  31   0.78 
SB_23818| Best HMM Match : PsbL (HMM E-Value=6.8)                      28   5.5  
SB_22055| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_8982| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.5  
SB_59159| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_35638| Best HMM Match : Upf2 (HMM E-Value=2.1e-17)
          Length = 1420

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = -1

Query: 324 HLTQFSYI-Y*ISTILGLSTEMN*ELEQFRIHLYLDITKTQKTHF*NNHFYTDYDCVVMY 148
           H+T +S +   +S+  G S+E++     FRI L   +  T   +F + ++    DC ++Y
Sbjct: 6   HVTPYSSLDLLLSSTAGSSSELDPPQHLFRIRLICTLLDTCGQYFDHGNYRKKLDCFLVY 65

Query: 147 FLI 139
           F +
Sbjct: 66  FQV 68


>SB_23818| Best HMM Match : PsbL (HMM E-Value=6.8)
          Length = 377

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 9/23 (39%), Positives = 19/23 (82%)
 Frame = +1

Query: 265 LSRQTKDCRYLIYIRKLCEVLQG 333
           LSR+ +D + ++++RKL ++L+G
Sbjct: 319 LSREERDAQVVVFLRKLQDILEG 341


>SB_22055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 9/23 (39%), Positives = 19/23 (82%)
 Frame = +1

Query: 265 LSRQTKDCRYLIYIRKLCEVLQG 333
           LSR+ +D + ++++RKL ++L+G
Sbjct: 319 LSREERDAQVVVFLRKLQDILEG 341


>SB_8982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 432

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 20 GILCLDIANAYDRYP 64
          G++CLDI N  D+YP
Sbjct: 14 GLICLDIINTVDKYP 28


>SB_59159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 686

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +2

Query: 308 ENCVRCYKAASNLQNWHHTLSILI*---PEYLLYQHVFISF 421
           EN VR Y+     Q     LS       PEYLLY+H+F ++
Sbjct: 53  ENFVRLYQQRGGFQKAELPLSTDYKTGNPEYLLYKHLFANY 93


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,370,304
Number of Sequences: 59808
Number of extensions: 294567
Number of successful extensions: 454
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)