Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1009
         (528 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.1  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.1  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    24   1.1  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   1.5  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   1.5  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   1.9  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.6  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.6  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   3.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   4.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   5.9  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   7.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.8  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   7.8  

>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 367 QSMMPVLKIGSCLVTPHTVFLYILDIYNPWFVY*DE 260
           Q+ + V   GSCL  P  +F     I   WF + D+
Sbjct: 88  QTSVVVTHDGSCLYVPPGIFKSTCKIDIAWFPFDDQ 123


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 367 QSMMPVLKIGSCLVTPHTVFLYILDIYNPWFVY*DE 260
           Q+ + V   GSCL  P  +F     I   WF + D+
Sbjct: 88  QTSVVVTHDGSCLYVPPGIFKSTCKIDITWFPFDDQ 123


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 367 QSMMPVLKIGSCLVTPHTVFLYILDIYNPWFVY*DE 260
           Q+ + V   GSCL  P  +F     I   WF + D+
Sbjct: 88  QTSVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDDQ 123


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 367 QSMMPVLKIGSCLVTPHTVFLYILDIYNPWFVY*DE 260
           Q+ + V   GSCL  P  +F     I   WF + D+
Sbjct: 156 QTNVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDDQ 191


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 367 QSMMPVLKIGSCLVTPHTVFLYILDIYNPWFVY*DE 260
           Q+ + V   GSCL  P  +F     I   WF + D+
Sbjct: 156 QTNVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDDQ 191


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 367 QSMMPVLKIGSCLVTPHTVFLYILDIYNPWFVY*DE 260
           Q+ + V   GSCL  P  +F     I   WF + D+
Sbjct: 88  QTSVVVTHDGSCLYVPPGIFGSTCKIDIAWFPFDDQ 123


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -3

Query: 367 QSMMPVLKIGSCLVTPHTVFLYILDIYNPWFVY*DE 260
           Q+ + V   GSCL  P  +F     +   WF + D+
Sbjct: 88  QTSVVVTHDGSCLYVPPGIFKSTCKMDVAWFPFDDQ 123


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -3

Query: 367 QSMMPVLKIGSCLVTPHTVFLYILDIYNPWFVY*DE 260
           Q+ + V   GSCL  P  +F     +   WF + D+
Sbjct: 88  QTSVVVTHDGSCLYVPPGIFKSTCKMDIAWFPFDDQ 123


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 178 LYGLRLCSYVFSHSISPVM 122
           LY L  C Y FS +I+P++
Sbjct: 309 LYILSGCLYYFSTTINPIL 327


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 178 LYGLRLCSYVFSHSISPVM 122
           +Y L  C Y FS +I+P++
Sbjct: 297 VYPLTGCLYYFSTTINPIL 315


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -3

Query: 340 GSCLVTPHTVFLYILDIYNPWFVY*DE 260
           G+CL  P  +F     I   WF + D+
Sbjct: 134 GTCLYVPPGIFKSTCKIDITWFPFDDQ 160


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +1

Query: 178 EVIISKMSFLCFGYVEI*MNPK 243
           E+  +K  F C  Y ++ +NP+
Sbjct: 75  ELSATKFGFPCLQYTQLPVNPR 96


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 109 IDEMPLRD*SNEKIH 153
           +DE PL   SN+K+H
Sbjct: 261 LDEKPLDVSSNDKVH 275


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +1

Query: 178 EVIISKMSFLCFGYVEI*MNPK 243
           E+  +K  F C  Y ++ +NP+
Sbjct: 75  ELSATKFGFPCLQYTQLPVNPR 96


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,240
Number of Sequences: 438
Number of extensions: 3145
Number of successful extensions: 15
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)