Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1008
         (594 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1496 - 30567968-30568210,30568345-30568513,30568635-305687...    29   3.7  
09_03_0110 + 12432562-12432801,12432811-12433419                       28   4.9  
08_01_1009 - 10211687-10212070,10212165-10212314,10213223-10214080     28   6.5  
03_02_0712 - 10600147-10600196,10600257-10600378,10600993-106014...    28   6.5  
06_03_0381 - 20106714-20107088,20107177-20107594,20107721-201079...    27   8.5  

>06_03_1496 -
           30567968-30568210,30568345-30568513,30568635-30568736,
           30569087-30571855,30572402-30572430,30572546-30572659,
           30572735-30572846,30574730-30574845,30574928-30575068,
           30575121-30575243,30575346-30575478,30575842-30575972,
           30576065-30576300,30577073-30577376
          Length = 1573

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
 Frame = +2

Query: 431 IMKSVPGGHNLFVQDKEVASLIENLYSKLKLVLVRKDEQKSAALRAHLGR-IDGL 592
           ++K+  GG   +V+DK   ++  NLYS  +L+ V+    ++ ++ A+L   +DGL
Sbjct: 368 LLKTTNGGKT-WVRDKAADNIAANLYSVNQLIRVQLTLLQTISVSANLAELVDGL 421


>09_03_0110 + 12432562-12432801,12432811-12433419
          Length = 282

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
 Frame = -1

Query: 228 RLPSIVDAFIIS--SIS-GTSPLAVPFSAISSDIVI 130
           R+PS+   ++++   IS G +PLA+P SA SS +VI
Sbjct: 124 RIPSVPTFYVVALTGISVGGAPLAIPPSAFSSGMVI 159


>08_01_1009 - 10211687-10212070,10212165-10212314,10213223-10214080
          Length = 463

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 332 PPPDFRTNFEATLPPILIDNG-LAILENEKIER 427
           PPP  RT+    LPP ++D+  LA+L  +K+ R
Sbjct: 23  PPPPRRTDMLMALPPDILDDRILALLPFDKLVR 55


>03_02_0712 -
           10600147-10600196,10600257-10600378,10600993-10601489,
           10601663-10601851,10601936-10602099,10602193-10602446,
           10602535-10602691,10602830-10602995,10603121-10603227,
           10603305-10603478,10603594-10603689,10603781-10603862,
           10603948-10604058,10604253-10604309,10604638-10604709,
           10604799-10605041,10605195-10605341,10605381-10605616,
           10605745-10605865
          Length = 1014

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 107 LLNSSVS*ITMSDEIAENGTANGDVPEIELIIKASTID 220
           + N  V  + ++DEI  N     +VP+  L+  AST+D
Sbjct: 525 IYNEQVRDLLVNDEIRNNSQNGLNVPDASLVCVASTMD 562


>06_03_0381 -
           20106714-20107088,20107177-20107594,20107721-20107970,
           20108109-20108169,20108346-20108422,20108557-20109007
          Length = 543

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 430 HHEVRARGTQPIRAGQGGRVSNREPVFKTEAGAGS 534
           HH +R RG     AG G   ++ +PV  +EA  GS
Sbjct: 385 HHHLRWRGGA---AGSGNTTASSDPVVASEAALGS 416


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,764,832
Number of Sequences: 37544
Number of extensions: 398391
Number of successful extensions: 1039
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)