Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1008
         (594 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12950| Best HMM Match : GST_C (HMM E-Value=6.7)                     44   9e-05
SB_44069| Best HMM Match : Rad21_Rec8 (HMM E-Value=0.0016)             31   0.93 
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_14261| Best HMM Match : ig (HMM E-Value=0)                          28   6.5  
SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064)              27   8.6  
SB_25112| Best HMM Match : HEAT (HMM E-Value=3.09999e-40)              27   8.6  

>SB_12950| Best HMM Match : GST_C (HMM E-Value=6.7)
          Length = 253

 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 10/146 (6%)
 Frame = +2

Query: 167 ANGDVPEIELIIKASTIDGRRKGACLFCQEYFMDLYLLAELKTISLKVTTVDMQKPPPDF 346
           A   +P +EL +KAST+D +  GA + C    M    +  LK + +K   VD  K   + 
Sbjct: 2   AEETIPGVELFVKASTLDCQSLGADIQCHRIMM----MFALKGLPIKTFNVDTIK-KTNV 56

Query: 347 RTNFE-ATLPPILIDNGLAILEN-EKIERHIMKSVPGGHN---LFVQDKEVASLI----- 496
           + +F     P + +DNG  +L++ ++IER   K      +   L   +K++ S +     
Sbjct: 57  QLHFPYKNFPTLTLDNGAEVLDDLDEIERRFEKLSETNQSIPKLACTNKDILSFVNVGPG 116

Query: 497 ENLYSKLKLVLVRKDEQKSAALRAHL 574
             +Y K    +  + ++   AL+  L
Sbjct: 117 SKIYQKFNYFIKNRAQEGEEALKTQL 142


>SB_44069| Best HMM Match : Rad21_Rec8 (HMM E-Value=0.0016)
          Length = 800

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
 Frame = -1

Query: 330 FCMSTVVTFKLIVLSSANRYRSMKYS*QNRQAPF-RLPSIVDA--FIISSISGTSPLAVP 160
           FC   VV   LI L+ ++RY  M        +PF  LPS + +    +S+  G+  +  P
Sbjct: 271 FCEDRVVNEHLIALAKSDRYLRMPLP----LSPFLTLPSPISSPEHRMSTGGGSEIMRSP 326

Query: 159 FSAISSDIVI*ETLEFSKEVP 97
           F A + DI I E ++F+K  P
Sbjct: 327 FQAEAKDITIAE-IDFTKLSP 346


>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3142

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = -1

Query: 258  YS*QNRQAPFRLPSIVDAFIISSISGTSPLAVPFSAISSDI 136
            +S Q   APF LPS   +F  SS     PL+  FS  S+DI
Sbjct: 2922 HSTQPANAPFTLPSTSRSFNTSSPPSPKPLSSYFSRSSTDI 2962


>SB_14261| Best HMM Match : ig (HMM E-Value=0)
          Length = 1337

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 236  ACLFCQEYFMDLYLLAELKTISLKV 310
            ACL+ QEYF D+ LL +   I+ +V
Sbjct: 1264 ACLWRQEYFNDILLLTDNNPITTRV 1288


>SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064)
          Length = 1230

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +2

Query: 257 YFMDLYLLAELKTISLKVTTVDMQKPPPDFRTNFEATLPPILIDNGLAILENEKIE 424
           +F+ L LL       L   +VD++   PDF T+F + +    I +  AI + + +E
Sbjct: 31  FFVLLSLLVTTHQQELFEDSVDLENAVPDFETSFVSPVEEYDIPDDGAIRQEQSLE 86


>SB_25112| Best HMM Match : HEAT (HMM E-Value=3.09999e-40)
          Length = 1002

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +2

Query: 395 LAILENEKIERHIMKSVPGGHNLFVQDKEVASLIENLYSKLKLVLVRKDE 544
           L+ + +E + RH+ K +P   N   + +   S  E L S  KLVL  +D+
Sbjct: 549 LSAVADESLTRHLNKILPALLNAMQESQGTESHEEELESAKKLVLSVEDD 598


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,725,123
Number of Sequences: 59808
Number of extensions: 427095
Number of successful extensions: 1112
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)