Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1008
         (594 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07020.1 68415.m00803 protein kinase family protein contains ...    33   0.11 
At5g17960.1 68418.m02106 DC1 domain-containing protein contains ...    30   1.3  
At5g16710.1 68418.m01956 dehydroascorbate reductase, putative St...    30   1.3  
At3g10815.1 68416.m01302 zinc finger (C3HC4-type RING finger) fa...    30   1.3  
At4g14790.1 68417.m02274 ATP-dependent RNA helicase, mitochondri...    28   4.1  
At4g13130.1 68417.m02045 DC1 domain-containing protein contains ...    28   4.1  
At2g27035.1 68415.m03248 plastocyanin-like domain-containing pro...    28   4.1  
At2g23100.1 68415.m02756 DC1 domain-containing protein contains ...    27   9.4  
At1g10190.1 68414.m01149 expressed protein similar to hypothetic...    27   9.4  

>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
 Frame = +2

Query: 254 EYFMDLYLLAELKTISLKVTTVDMQKPPPDFRTNFEATLPPILIDNGLAILENEKIE-RH 430
           +Y MD+Y  A  + I+ K TT+++ K   + +   E  +  +  +  +AI ENEK + R 
Sbjct: 300 KYTMDMYNSACKEAIAAKKTTIELHKWKEERKHKLEEAI--LAKEAAMAIAENEKAKSRA 357

Query: 431 IMKSVPGGHNLFVQDKEVASLIE 499
            M+++   H +   + +    IE
Sbjct: 358 AMEALEAAHRMAETEAQKRKQIE 380


>At5g17960.1 68418.m02106 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 599

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 17/105 (16%)
 Frame = -3

Query: 415 LVLKYRQPIVDQYG-RECRFEVGAEIWGRLLHVHCCHL*TDCL-------KLSQQI*VHE 260
           L L Y +   D+Y   EC  EV    W    +  C  +  +CL       K       H 
Sbjct: 494 LTLCYGEDTDDKYWCEECEKEVNTSEWFYTCNECCTTIHRNCLFGFHVYLKPGNTFKYHN 553

Query: 259 VFLTE------QTGALSSSIDRRC---LYYKLDLRNVSISCTIFC 152
             + E       T  + S  + RC   +Y+K+D+RNV  SC + C
Sbjct: 554 RRMVEVLDNKSSTRPVCSRCEDRCQGSIYFKVDVRNVCASCLLKC 598


>At5g16710.1 68418.m01956 dehydroascorbate reductase, putative
           Strong similarity to dehydroascorbate reductase
           [Spinacia oleracea] gi:10952512 gb:AAG24945
          Length = 258

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +2

Query: 188 IELIIKASTIDGRRKGACLFCQEYFMDLYLLAELKTISLKVTTVDMQKPPPDF-RTNFEA 364
           +E+ +KAS     + G C FCQ+    + L  E K +   +  VD+   P  F + + E 
Sbjct: 49  LEICVKASITTPNKLGDCPFCQK----VLLTMEEKNVPYDMKMVDLSNKPEWFLKISPEG 104

Query: 365 TLPPILID 388
            +P +  D
Sbjct: 105 KVPVVKFD 112


>At3g10815.1 68416.m01302 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 199

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 218 DGRRKGACLFCQEYFMD-LYLLAELKTISL 304
           +GRR+GAC++C   F++ LY   EL    L
Sbjct: 24  EGRREGACIYCGNTFLERLYENVELSPFDL 53


>At4g14790.1 68417.m02274 ATP-dependent RNA helicase, mitochondrial
           (SUV3) identical to mitochondrial RNA helicase
           [Arabidopsis thaliana] GI:5823579; contains Pfam profile
           PF00271: Helicase conserved C-terminal domain
          Length = 571

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/64 (29%), Positives = 26/64 (40%)
 Frame = -2

Query: 593 EVHRCVRDELVTPLISVHLCEPAPASVLNTGSRLETRPPCPARIGCVPLARTS*CAVRFS 414
           E+H C  D  V PL+   L        ++T  RL    P    +  V   +T  C V FS
Sbjct: 201 ELHLC-GDPAVVPLVEDILKVTGDDVEVHTYERLSPLVPLKVPVSSVSSIKTGDCLVTFS 259

Query: 413 RSQV 402
           R  +
Sbjct: 260 RKDI 263


>At4g13130.1 68417.m02045 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 767

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 239 CLFCQEYFMDLYLLAELKTISLKVTTVDMQKPPP 340
           C  C EY MD Y        ++ V+   ++KPPP
Sbjct: 278 CYCCDEYLMDYYYYCSSCDFAMNVSC--LEKPPP 309


>At2g27035.1 68415.m03248 plastocyanin-like domain-containing
           protein low similarity to SP:P80728 Mavicyanin
           {Cucurbita pepo}; contains Pfam profile PF02298:
           Plastocyanin-like domain
          Length = 163

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 287 LKTISLKVTTVDMQKPPPDFRTNFEATLPPILIDNGL 397
           LK + L +T   + +PPP   TNF +T  P++  N +
Sbjct: 115 LKGMKLAITV--LPQPPPSAPTNFTSTTTPLIPPNAI 149


>At2g23100.1 68415.m02756 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 711

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +2

Query: 233 GACLFCQEYFMDLYLLAELKTISLKVTTVDMQKPPP 340
           G C  CQ+ F D+Y    +   SL  T     KPPP
Sbjct: 223 GKCKCCQKRFEDIYYHCSVCNFSLNFTCT--IKPPP 256


>At1g10190.1 68414.m01149 expressed protein similar to hypothetical
           protein GB:CAB10284 contains Pfam profile PF03080:
           Arabidopsis proteins of unknown function
          Length = 396

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 333 RPQISAPTSKRHSRPY*STMGWRYLRTRKSNGTS 434
           +P    P+ K H+  Y     W+ +R RK+N T+
Sbjct: 69  QPAFDHPSMKNHTYHYKMRPIWKRMRERKTNNTN 102


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,588,004
Number of Sequences: 28952
Number of extensions: 292013
Number of successful extensions: 717
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)