Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1006
         (528 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    27   0.077
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    24   0.95 
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    23   2.2  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    22   2.9  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    22   2.9  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 27.5 bits (58), Expect = 0.077
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -3

Query: 319 PSKLVFVCFSVVGTYLCIVLSWMLTKY--SAC*RSSQWGPSPSVRGSVIF 176
           P K  ++C     + +C+ L+W +     S     +Q+GP   V GS++F
Sbjct: 175 PLKAGYICTKTRASLICL-LAWFIAALFTSPILAITQYGPEEYVDGSIVF 223


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 0.95
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 361 WSVVPSTGNMKPTLP 317
           WS +  TGN  PTLP
Sbjct: 118 WSKLIETGNKPPTLP 132


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 355 VVPSTGNMKPTLPSKLVFVCFSVVGTYLCIVL 260
           +V  T N   T+   ++F+ + +VGT+  I L
Sbjct: 234 IVIGTKNTIETVAYSVIFILWHIVGTFSGIFL 265


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 271 TNMYQLLKNIQKPV*MGGLVSYYQWK 348
           TN+ Q+++ +Q P  + GL  + +WK
Sbjct: 448 TNL-QVIQWMQNPTELNGLRDFQEWK 472


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 271 TNMYQLLKNIQKPV*MGGLVSYYQWK 348
           TN+ Q+++ +Q P  + GL  + +WK
Sbjct: 455 TNL-QVIQWMQNPTELNGLRDFQEWK 479


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,719
Number of Sequences: 336
Number of extensions: 2762
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12782794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)