Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1006
         (528 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.5  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   5.9  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.8  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.8  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.8  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.8  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.8  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.8  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.8  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.8  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 309  SLDGRVGFILPVEGTTDQFVVGVE 380
            ++ GRVGF+ P E     F+ G++
Sbjct: 975  NVQGRVGFVTPFEHR--HFISGID 996


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 330 FILPVEGTTDQFVVGVERKFLFIQW 404
           F+L V G     V G    FL+I W
Sbjct: 231 FLLYVSGFITTEVAGTYAIFLYISW 255


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 351 TTDQFVVGVERKFLFIQW 404
           T D++V+    K LF+QW
Sbjct: 285 TPDRYVMPSWIKMLFLQW 302


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 351 TTDQFVVGVERKFLFIQW 404
           T D++V+    K LF+QW
Sbjct: 285 TPDRYVMPSWIKMLFLQW 302


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 351 TTDQFVVGVERKFLFIQW 404
           T D++V+    K LF+QW
Sbjct: 285 TPDRYVMPSWIKMLFLQW 302


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 351 TTDQFVVGVERKFLFIQW 404
           T D++V+    K LF+QW
Sbjct: 285 TPDRYVMPSWIKMLFLQW 302


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 351 TTDQFVVGVERKFLFIQW 404
           T D++V+    K LF+QW
Sbjct: 285 TPDRYVMPSWIKMLFLQW 302


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 351 TTDQFVVGVERKFLFIQW 404
           T D++V+    K LF+QW
Sbjct: 285 TPDRYVMPSWIKMLFLQW 302


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 351 TTDQFVVGVERKFLFIQW 404
           T D++V+    K LF+QW
Sbjct: 353 TPDRYVMPSWIKMLFLQW 370


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 351 TTDQFVVGVERKFLFIQW 404
           T D++V+    K LF+QW
Sbjct: 353 TPDRYVMPSWIKMLFLQW 370


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,174
Number of Sequences: 438
Number of extensions: 3073
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)