Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1004
         (546 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q05FQ2 Cluster: Putative uncharacterized protein; n=1; ...    32   7.5  
UniRef50_UPI000039AD79 Cluster: COG0504: CTP synthase (UTP-ammon...    32   9.9  

>UniRef50_Q05FQ2 Cluster: Putative uncharacterized protein; n=1;
           Candidatus Carsonella ruddii PV|Rep: Putative
           uncharacterized protein - Carsonella ruddii (strain PV)
          Length = 405

 Score = 32.3 bits (70), Expect = 7.5
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
 Frame = -1

Query: 390 NLKSS*VNCNTENVKFYKS------INKSICATKNLDRVYFKFVHN 271
           ++K +  NC   N   YK+      I+K+IC +KNL  ++F F+ N
Sbjct: 240 SIKKNKKNCYNINYNIYKNKIYINLISKNICFSKNLKNIFFFFIFN 285


>UniRef50_UPI000039AD79 Cluster: COG0504: CTP synthase (UTP-ammonia
           lyase); n=1; Haemophilus influenzae R2866|Rep: COG0504:
           CTP synthase (UTP-ammonia lyase) - Haemophilus
           influenzae R2866
          Length = 147

 Score = 31.9 bits (69), Expect = 9.9
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -1

Query: 372 VNCNTENVKFYKSINKSICATKNLDRVYF 286
           V  N +N+  +K +   +C  KN++++YF
Sbjct: 28  VYVNADNISHFKKVKNRLCPNKNVEKIYF 56


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 470,956,336
Number of Sequences: 1657284
Number of extensions: 8603273
Number of successful extensions: 17985
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17985
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35405708495
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)