Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1004
         (546 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    29   0.59 
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p...    27   2.4  
SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.2  
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    26   4.2  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    25   7.3  

>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 28.7 bits (61), Expect = 0.59
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 163 ILFLNTTHSIVVNIFIRSPEKKYDLTKGIRRTLNNLIMH 279
           +L+L T  S + NI       +Y ++KGI   + NLI H
Sbjct: 692 LLYLETFSSFLENIITNEGHARYLISKGIVSHVLNLIQH 730


>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 360

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 344 NLTFSVL-QFTYEDFKLKTQIYLSLNGMIDVKLMSTH 451
           N   +VL  F Y     K  ++L  NG++DVK + TH
Sbjct: 293 NYEINVLGSFRYAHGCYKQSLFLVSNGLVDVKPLITH 329


>SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +1

Query: 211 RSPEKKYDLTKGIRRTLNNL-IMHKFKINAI*IFGSTN 321
           R P   YD  KG+  TL  L + H+ K   + +F  TN
Sbjct: 207 RKPIPDYDFMKGLETTLQELYVEHQSKKRRLELFQLTN 244


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 529 EKNQGLTTTHPDYTSNH 479
           EKNQ +T+TH  +T+ H
Sbjct: 459 EKNQSITSTHHPFTAPH 475


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1372

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +1

Query: 46   VQFDSYHKRHLSCLKIKTFPA 108
            V  D+Y+++ ++ LKIK+F A
Sbjct: 1030 VDIDTYYEKRMAALKIKSFLA 1050


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,091,636
Number of Sequences: 5004
Number of extensions: 40854
Number of successful extensions: 92
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)