Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1004
         (546 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83217-4|CAB05683.2| 1178|Caenorhabditis elegans Hypothetical pr...    28   3.8  
Z68319-5|CAA92703.1|  261|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AL023837-1|CAA19499.1|  718|Caenorhabditis elegans Hypothetical ...    28   5.0  
Z83319-5|CAB05907.2|  446|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>Z83217-4|CAB05683.2| 1178|Caenorhabditis elegans Hypothetical
           protein C10C6.6 protein.
          Length = 1178

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -2

Query: 275 IIKLFSVRLMPFVRSYFFSGDLMKILTTIECVVFKNRMAIL-HFRDSGNRKYSGNILAG 102
           + ++F V L      +++S   + +L T E  + K +M  +   R+ GN+ Y  N+L G
Sbjct: 197 VFQVFCVGLWCLEDMWYYSLFTLFMLMTFEATLVKQQMKNMSEIRNMGNKTYMINVLRG 255


>Z68319-5|CAA92703.1|  261|Caenorhabditis elegans Hypothetical
           protein T23G7.5a protein.
          Length = 261

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 148 KCSIAILFLNTTHSIVVNIFIRSPEKKY 231
           +C+  + FLN +HSI+++IF  S    Y
Sbjct: 5   RCTAIVNFLNLSHSILISIFSVSVMSNY 32


>AL023837-1|CAA19499.1|  718|Caenorhabditis elegans Hypothetical
           protein Y37H2C.1 protein.
          Length = 718

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/60 (23%), Positives = 25/60 (41%)
 Frame = +2

Query: 356 SVLQFTYEDFKLKTQIYLSLNGMIDVKLMSTHFNTIRAQWRMI*GIVWVRCSETLIFFQL 535
           S++ F +    + + IY S  G + + L       IR +W        +RC   ++F  L
Sbjct: 584 SIVTFLHSGISVHSAIYFSAKGQLVIYLFFYIIQKIRFEWSSFTFSYTIRCIFLIVFLVL 643


>Z83319-5|CAB05907.2|  446|Caenorhabditis elegans Hypothetical
           protein T02D1.4 protein.
          Length = 446

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 345 FYKSINKSICATKNLDRVYF 286
           F+ S +KS+C  +NL R YF
Sbjct: 195 FFPSHSKSLCTKRNLSRSYF 214


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,327,900
Number of Sequences: 27780
Number of extensions: 221791
Number of successful extensions: 460
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)