Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1004
         (546 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43300.1 68418.m05292 glycerophosphoryl diester phosphodieste...    28   3.5  
At1g53180.1 68414.m06027 expressed protein                             27   6.2  

>At5g43300.1 68418.m05292 glycerophosphoryl diester
           phosphodiesterase family protein contains Pfam profile
           PF03009: Glycerophosphoryl diester phosphodiesterase
           family
          Length = 333

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
 Frame = +1

Query: 151 CSIAILFLNTTHSIVVNIFIRSPEKKYDLTKGIRRTLNNL--IMHKFKINAI*IFGSTNR 324
           C++   FLN  HS+  NI ++  +        +R+TL+N+  ++++   N   IF S + 
Sbjct: 117 CTLEDAFLNVKHSLGFNIELKFDDNTVYGEGELRQTLDNILTVVNEHSKNRPIIFSSFHP 176

Query: 325 FIYRFIKFNILCIAIY 372
              R I+    C  ++
Sbjct: 177 DAARLIRNMQRCYPVF 192


>At1g53180.1 68414.m06027 expressed protein
          Length = 358

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -1

Query: 534 SWKKIKVSLQRTQTIP 487
           S+  +K+SLQRTQT+P
Sbjct: 209 SYSSVKISLQRTQTMP 224


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,252,514
Number of Sequences: 28952
Number of extensions: 188799
Number of successful extensions: 387
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)