Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1003
         (344 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   0.77 
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   0.77 
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     23   0.77 
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   4.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   4.1  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    20   7.2  

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 0.77
 Identities = 7/29 (24%), Positives = 18/29 (62%)
 Frame = -2

Query: 175 YSHPFQRGYQSNYQKFHQPETLLLGRLPV 89
           Y++ +   Y +NY+K ++   + + ++PV
Sbjct: 101 YNNNYNNNYNNNYKKLYKNYIINIEQIPV 129


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 0.77
 Identities = 7/29 (24%), Positives = 18/29 (62%)
 Frame = -2

Query: 175 YSHPFQRGYQSNYQKFHQPETLLLGRLPV 89
           Y++ +   Y +NY+K ++   + + ++PV
Sbjct: 101 YNNNYNNNYNNNYKKLYKNYIINIEQIPV 129


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 23.4 bits (48), Expect = 0.77
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 265 TTKLQLSKNVICAHCTGVGGK 327
           +T L+L    I  HC  VGGK
Sbjct: 35  STILRLDPKFIALHCQEVGGK 55


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -2

Query: 256 HTNLLMSLQGDAWYLRHGL 200
           +TN+++S  G+  +L HG+
Sbjct: 108 NTNVIVSHTGEVVWLSHGI 126


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -2

Query: 262 SQHTNLLMSLQGDAWYLRHGLDHGLDHI 179
           + H NLL ++        H + HG  HI
Sbjct: 399 ASHNNLLNNVYSTPGPHHHTMGHGHSHI 426


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 223 HPLAVTLEDLYAGKTTKLQLSKNVICA 303
           HP+   +  +  GKTT L   +N   A
Sbjct: 145 HPIVTIMGHVDHGKTTLLDALRNTSIA 171


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,863
Number of Sequences: 438
Number of extensions: 1726
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7812315
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)