Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG1002
(451 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 31 0.082
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa... 26 0.15
SPCC4G3.15c |||CCR4-Not complex subunit Not2 |Schizosaccharomyce... 28 0.58
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 28 0.58
SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit Mdm12|Schi... 27 1.0
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 27 1.3
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ... 27 1.3
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 27 1.3
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 27 1.3
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S... 27 1.3
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 27 1.8
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 2.3
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 26 3.1
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 26 3.1
SPCC622.01c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 3.1
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 25 4.1
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces... 25 4.1
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 4.1
SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator ... 25 5.4
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 25 5.4
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 25 5.4
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch... 25 5.4
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 25 5.4
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 25 5.4
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 25 7.1
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po... 25 7.1
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 24 9.4
SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyce... 24 9.4
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 24 9.4
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4... 24 9.4
SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 24 9.4
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 24 9.4
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 24 9.4
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 24 9.4
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 31.1 bits (67), Expect = 0.082
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = +1
Query: 52 KEIMSKSTQELDD--SAASKSPNSLEMPPKKFSGFRHENEPPIKLLLFPFAD-THPIREL 222
KE++SKS++E DD K E +KF ENE I L T I +L
Sbjct: 552 KEVLSKSSKESDDYEEVVGKLRTEAEREIEKFEKTIRENEESISLFKEEVEKLTDEITQL 611
Query: 223 AEFYKD 240
+E Y D
Sbjct: 612 SERYND 617
>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 26.2 bits (55), Expect(2) = 0.15
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +1
Query: 22 RGLPVSPVKEKEIMSKSTQE-LDDSAASKSPNSLEMPPKKFSGFRHENEP-PIKL 180
R + +P K++ K E + A S S +++ KKF R N P IKL
Sbjct: 302 RTIDKAPAISKKLQQKDKAEKFSNKAVSSSTTEIKLKKKKFGKHRLPNNPLEIKL 356
Score = 22.6 bits (46), Expect(2) = 0.15
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 247 NAPHLKLTDELTQSNKSLEP 306
N +KL DELT S + L+P
Sbjct: 350 NPLEIKLGDELTSSLRELKP 369
>SPCC4G3.15c |||CCR4-Not complex subunit Not2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 176
Score = 28.3 bits (60), Expect = 0.58
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = +1
Query: 4 GCRNSARGLPVSPVKEKEIMSKSTQELDDSAASKSPNSLEMPPKKFSGFRHENEPPIKLL 183
GC +A G ++PV+E ++S + +K P S M K + +++ N PP
Sbjct: 22 GCDLAALGFDLAPVEEDRLISTNLFSPWAELNTKKPVSQPM-FKLPACYKNVNPPPAISK 80
Query: 184 LFPFAD 201
+F F+D
Sbjct: 81 IFQFSD 86
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 28.3 bits (60), Expect = 0.58
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +1
Query: 262 KLTDELTQSNKSLEPVLEDVELTNEDLSKDLELYENSVVEFDELLADMCRSAEWSGN 432
KL +E T+S + L D+ ++ D++K EN ++E+L D CR + SGN
Sbjct: 627 KLQEEPTRS--AAARALCDIFMSVTDITK----IENGTKIYEEILQDCCRHIDKSGN 677
>SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit
Mdm12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 273
Score = 27.5 bits (58), Expect = 1.0
Identities = 24/92 (26%), Positives = 36/92 (39%)
Frame = +1
Query: 160 NEPPIKLLLFPFADTHPIRELAEFYKDFFNAPHLKLTDELTQSNKSLEPVLEDVELTNED 339
N P+ L P+A HP LA ++ FN+P + LT P D
Sbjct: 86 NVSPVLTDLPPYAAEHPFSRLA-YFNPAFNSPGILSASGLTSPIPESRPSTPMDNHQERD 144
Query: 340 LSKDLELYENSVVEFDELLADMCRSAEWSGNY 435
S D ++ + + D A++ A S NY
Sbjct: 145 RSNDFQVTAHVSYDGD---ANLSLEAVLSMNY 173
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 27.1 bits (57), Expect = 1.3
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Frame = -3
Query: 188 NNNSFIGGSFS*RNPENFFG----GISKEFGL 105
N SF+ G+FS ++FFG G+ +E GL
Sbjct: 818 NGESFVTGNFSYETGDDFFGLRELGLDRELGL 849
>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 639
Score = 27.1 bits (57), Expect = 1.3
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 298 LEPVLEDVELTNEDLSKDLELYENSVVEFDELLA 399
++P E++EL EDLSK LYE++ V F ++
Sbjct: 95 VQPTQENIELIIEDLSKG--LYESAYVCFSSTIS 126
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 27.1 bits (57), Expect = 1.3
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1
Query: 235 KDFFNAPHLKLTDELTQSNKSLEPVLEDVEL 327
+D FN L DELT+SNK + +++ +EL
Sbjct: 1163 RDLFNVSFLSCWDELTESNK--KNLVKSIEL 1191
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 27.1 bits (57), Expect = 1.3
Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +1
Query: 184 LFPFADTHPIRELAEFYKDFFNAPHLKLTDELTQSNKSLEPVLEDVELTNEDLSKDLELY 363
+F D + + E + FNA + + LE + D+E+ ++ ++K + Y
Sbjct: 165 IFYTMDQNRSEAVNEAFISLFNAGLIYRANRFVNWCPKLESAVSDIEVESQQINKPVTKY 224
Query: 364 -ENSVVEF 384
+N+ VEF
Sbjct: 225 VDNTPVEF 232
>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
Raf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 638
Score = 27.1 bits (57), Expect = 1.3
Identities = 21/58 (36%), Positives = 29/58 (50%)
Frame = -3
Query: 185 NNSFIGGSFS*RNPENFFGGISKEFGLFDAALSSNSCVLLDMISFSLTGDTGNPRAEF 12
NN FI +F+ N +GG S+ DA+ + CV D+ +SL D GN EF
Sbjct: 578 NNPFIQ-NFTEMNSAITYGGFSE-----DASKLTVCCVGGDVNMYSLGNDNGNKFGEF 629
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 26.6 bits (56), Expect = 1.8
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 85 DDSAASKSPNSLEMPPKKFS 144
+DS SK PNSLE+P +K S
Sbjct: 135 EDSVISKFPNSLEVPFRKRS 154
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 26.2 bits (55), Expect = 2.3
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 268 TDELTQSNKSLEPVLEDVELTNEDLSKDLELYENSVVEFDE 390
T E + SLE + D+ L + L + +E Y+ ++VEF E
Sbjct: 300 THEQKELINSLEKKVSDIALEKQLLEEAVERYKLAMVEFAE 340
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 25.8 bits (54), Expect = 3.1
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Frame = +1
Query: 157 ENEPPIKLLLFP---FADTHPIRELAEFYKDFFNAPHLKLTDELTQSNKSLEPVLEDV-E 324
+NEP ++++ FAD + E+A F F K EL + ++SLE ++E + +
Sbjct: 188 KNEPNVEIVKINADVFADIGRLHEVASFPTIKFFPKDDKDKPELYEGDRSLESLIEYINK 247
Query: 325 LTNEDLSKDLELYENS--VVEFDELLAD 402
+ S D L + + FDE A+
Sbjct: 248 KSGTQRSPDGTLLSTAGRIPTFDEFAAE 275
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 25.8 bits (54), Expect = 3.1
Identities = 18/58 (31%), Positives = 24/58 (41%)
Frame = +1
Query: 1 PGCRNSARGLPVSPVKEKEIMSKSTQELDDSAASKSPNSLEMPPKKFSGFRHENEPPI 174
P R+ AR P E S D A+SKS NSL+ + S E+ P +
Sbjct: 563 PSIRH-ARSSPYIDTGHNEASKFSHTSFDPKASSKSSNSLKESVEALSEIPFEDAPAL 619
>SPCC622.01c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 149
Score = 25.8 bits (54), Expect = 3.1
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +1
Query: 43 VKEKEIMSKSTQELDDSAASKSPNSLEMPPKKFSGFRHENE 165
V E++I E+ +A P + E+PP + ENE
Sbjct: 92 VDERQIEEPGEDEMALNAGGYYPYAEEVPPPSYPSLEEENE 132
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1379
Score = 25.4 bits (53), Expect = 4.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 91 SAASKSPNSLEMPPKKFSGFRHENEPPIK 177
S A SP++L +P KK F H ++ K
Sbjct: 1181 SIAKPSPHTLRVPQKKHKHFYHRDDGKYK 1209
>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 476
Score = 25.4 bits (53), Expect = 4.1
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1
Query: 13 NSARGLPVSPVKEKEIMSKSTQELDDSAASKSPNSLEMPP 132
NS + VSP+K KE+ + S S P S + P
Sbjct: 213 NSEEDVCVSPMKPKEVSLMGKANSNRSGHSHQPQSTQFSP 252
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.4 bits (53), Expect = 4.1
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 262 KLTDELTQSNKSLEPVLEDVELTNEDLSKDLELYENSVVE 381
+L E+T S + E L D + DLS+++E N + E
Sbjct: 1520 ELDHEITASKNNYEGKLNDKDSIIRDLSENIEQLNNLLAE 1559
Score = 24.2 bits (50), Expect = 9.4
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 280 TQSNKSLEPVLEDVELTNEDLSKDLELYENSVVEFDEL 393
+Q+NKSLE ++ +++ K L+ + VE +EL
Sbjct: 1063 SQTNKSLEDKTNQLKYIEKNVQKLLDEKDQRNVELEEL 1100
>SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 325
Score = 25.0 bits (52), Expect = 5.4
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +1
Query: 43 VKEKEIMSKSTQELDDSAASKSPNSLEMPPKKFSGFR 153
V EK I+ + D+S+ K+P L + + FR
Sbjct: 4 VDEKTILELENERFDESSQFKTPEKLIVEASDMTAFR 40
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 25.0 bits (52), Expect = 5.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 172 LVVRFRDGIQRISLVASLKNSDSLMLHCH 86
LVVRF + +V+S N D ++ H H
Sbjct: 51 LVVRFSNRFVTCQIVSSRVNGDYVLAHAH 79
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 25.0 bits (52), Expect = 5.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 20 HEDCLYLLLKKRKSCLRAHKN 82
HE YL+ +KSCL+ HKN
Sbjct: 216 HEFMRYLVDAWQKSCLQNHKN 236
>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 840
Score = 25.0 bits (52), Expect = 5.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 337 DLSKDLELYENSVVEF 384
D+ K+LE+Y N VEF
Sbjct: 677 DIRKELEIYANETVEF 692
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 25.0 bits (52), Expect = 5.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 172 LVVRFRDGIQRISLVASLKNSDSLMLHCH 86
LVVRF + +V+S N D ++ H H
Sbjct: 51 LVVRFSNRFVTCQIVSSRVNGDYVLAHAH 79
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 25.0 bits (52), Expect = 5.4
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 265 LTDELTQSNKSLEPVLEDVELTNEDLSKDLELYENSVVEFDEL 393
L E + N L+ + L N+DLSK EL ++ + E +EL
Sbjct: 1455 LQTEFEKINLKLKEATKSGILDNKDLSKFSELIQSLLKENEEL 1497
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 24.6 bits (51), Expect = 7.1
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +1
Query: 49 EKEIMSKSTQELDDSAASKSPNSLEMP 129
+K I +S+ ++DD +S SP++L+ P
Sbjct: 898 DKCISLESSNDIDDRPSSTSPSTLKNP 924
>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 296
Score = 24.6 bits (51), Expect = 7.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 238 LCKTRLVLV*DVCQQKGTITVL 173
LC++ +LV DVC+ K +T L
Sbjct: 76 LCESNNILVCDVCRNKINLTAL 97
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 24.2 bits (50), Expect = 9.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 307 VLEDVELTNEDLSKDLELYENSVVEF 384
+ ED+ + EDL D + +SVV+F
Sbjct: 260 IAEDIGILIEDLESDACKFSHSVVDF 285
>SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 24.2 bits (50), Expect = 9.4
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +1
Query: 286 SNKSLEPVLEDVELTNEDLSKDLELYENSVVEFDELLADMCRSAEWS 426
SNK LE VL++ + S DL+ ++S+ E + A M R + S
Sbjct: 107 SNKKLEAVLKEELHQIKKFSSDLQSLKSSMGERQKQQAAMSRRGKKS 153
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 24.2 bits (50), Expect = 9.4
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 253 PHLKLTDELTQSNKSLEPVLEDVELTNEDLSKDLELYENSVVEFD 387
P+ D+ + S+KSL + + + ED D + E+ EFD
Sbjct: 169 PYFNNIDQDSISDKSLPSTNQSLHHSEEDTESDNDFSESIHPEFD 213
>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 684
Score = 24.2 bits (50), Expect = 9.4
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +1
Query: 166 PPIKLLLFPFADTHPIRELAEFYKDFFN 249
PP L + P DTHP + + +F N
Sbjct: 607 PPDDLNIIPVEDTHPTLLVIDLINEFEN 634
>SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 120
Score = 24.2 bits (50), Expect = 9.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 322 LRLLKQALSFCSIVLAHLSTSSVAH*RNL 236
L+LLKQ S SI + HLS + NL
Sbjct: 51 LKLLKQIRSLFSIAIGHLSLMLIEGSANL 79
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 24.2 bits (50), Expect = 9.4
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 265 LTDELTQSNKSLEPVLEDVELTNEDLSKDLELYENSVVEFDELLADMC 408
L D+ + S E VLE ++ + +D+ D + NSV LL +C
Sbjct: 629 LLDKTVSGSISAEDVLEHLDSSQDDVLIDYLVKSNSVTH-RALLLKLC 675
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 24.2 bits (50), Expect = 9.4
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -1
Query: 325 VLRLLKQALSFCSIVLAHLSTSSVAH*RNLCKTRLVLV*DVCQQK--GTITVLLVV 164
V + L+Q L FCS + S V H N+ RL+L + QQ GT + +V
Sbjct: 520 VQQALRQQLLFCSNPVVLDSMRHVLHTANVQIKRLILCFEDTQQSNDGTANINSIV 575
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 24.2 bits (50), Expect = 9.4
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +1
Query: 271 DELTQSNKSLEPVLEDVELTNEDLSKDLELYENSVVEFDELLADMCRS 414
DEL +S KSL+ L ++ +++S L + NS +E + D +S
Sbjct: 740 DELDESYKSLQEQLASKKIEVQNVSSQLSIC-NSQLEQSNHIVDNLKS 786
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.134 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,760,531
Number of Sequences: 5004
Number of extensions: 33687
Number of successful extensions: 183
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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