Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG1002
(451 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z98866-21|CAD56612.1| 743|Caenorhabditis elegans Hypothetical p... 29 1.6
Z98866-20|CAB11567.1| 734|Caenorhabditis elegans Hypothetical p... 29 1.6
AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosenso... 29 1.6
AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosenso... 29 1.6
AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensor... 29 1.6
AF067945-7|ABQ13059.1| 954|Caenorhabditis elegans Mechanosensor... 29 1.6
AF067945-6|AAV28326.1| 1167|Caenorhabditis elegans Mechanosensor... 29 1.6
AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensor... 29 1.6
AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensor... 29 1.6
AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensor... 29 1.6
AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensor... 29 1.6
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr... 28 2.7
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p... 28 2.7
U23179-12|AAN63445.1| 224|Caenorhabditis elegans Hypothetical p... 28 2.7
U23179-11|AAN63447.1| 293|Caenorhabditis elegans Hypothetical p... 28 2.7
U23179-10|AAN63446.1| 329|Caenorhabditis elegans Hypothetical p... 28 2.7
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein. 28 2.7
AF038608-17|AAC25822.2| 425|Caenorhabditis elegans Hypothetical... 28 2.7
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr... 28 3.6
U80445-2|AAB37795.2| 1029|Caenorhabditis elegans Hypothetical pr... 28 3.6
U55376-3|AAA98005.3| 525|Caenorhabditis elegans Nuclear hormone... 28 3.6
U53141-3|AAA96105.3| 596|Caenorhabditis elegans Hypothetical pr... 27 4.8
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 27 4.8
AM748821-1|CAO72175.2| 596|Caenorhabditis elegans hexosaminidas... 27 4.8
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 27 4.8
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 27 4.8
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 27 4.8
AC024826-15|AAF60790.1| 354|Caenorhabditis elegans Hypothetical... 27 4.8
Z78239-1|CAB01632.1| 232|Caenorhabditis elegans Hypothetical pr... 27 8.3
AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein. 27 8.3
AF002679-1|AAB60893.1| 232|Caenorhabditis elegans histone H1-li... 27 8.3
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 27 8.3
>Z98866-21|CAD56612.1| 743|Caenorhabditis elegans Hypothetical
protein Y49E10.23b protein.
Length = 743
Score = 29.1 bits (62), Expect = 1.6
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = +1
Query: 259 LKLTDELTQSNKSLEPVLEDVELTNEDLSKDLELYENSVVEFDELLADMCRSAE 420
LKLT ELT+ N L+ L+D E N + +E + VE L ++C+S E
Sbjct: 389 LKLTQELTERNMELQRKLKDEEGKNTSHNSTIEKLQ---VELTTSL-ELCKSFE 438
>Z98866-20|CAB11567.1| 734|Caenorhabditis elegans Hypothetical
protein Y49E10.23a protein.
Length = 734
Score = 29.1 bits (62), Expect = 1.6
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = +1
Query: 259 LKLTDELTQSNKSLEPVLEDVELTNEDLSKDLELYENSVVEFDELLADMCRSAE 420
LKLT ELT+ N L+ L+D E N + +E + VE L ++C+S E
Sbjct: 389 LKLTQELTERNMELQRKLKDEEGKNTSHNSTIEKLQ---VELTTSL-ELCKSFE 438
>AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform g protein.
Length = 1604
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +1
Query: 274 ELTQSNKSLEPVLEDVELTNEDLSKDLELYENSVVEFDELLADMCRSAEWSGNY 435
EL + +K +LE ++ E K L +E+D+ L + C SA+W+ Y
Sbjct: 181 ELKKEDKIEHDILEHLK-NKEPTEKVLSTPSTCDLEYDDALRNECTSADWTELY 233
>AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform f protein.
Length = 1818
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +1
Query: 274 ELTQSNKSLEPVLEDVELTNEDLSKDLELYENSVVEFDELLADMCRSAEWSGNY 435
EL + +K +LE ++ E K L +E+D+ L + C SA+W+ Y
Sbjct: 395 ELKKEDKIEHDILEHLK-NKEPTEKVLSTPSTCDLEYDDALRNECTSADWTELY 447
>AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform e protein.
Length = 1954
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +1
Query: 274 ELTQSNKSLEPVLEDVELTNEDLSKDLELYENSVVEFDELLADMCRSAEWSGNY 435
EL + +K +LE ++ E K L +E+D+ L + C SA+W+ Y
Sbjct: 531 ELKKEDKIEHDILEHLK-NKEPTEKVLSTPSTCDLEYDDALRNECTSADWTELY 583
>AF067945-7|ABQ13059.1| 954|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform i protein.
Length = 954
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +1
Query: 274 ELTQSNKSLEPVLEDVELTNEDLSKDLELYENSVVEFDELLADMCRSAEWSGNY 435
EL + +K +LE ++ E K L +E+D+ L + C SA+W+ Y
Sbjct: 580 ELKKEDKIEHDILEHLK-NKEPTEKVLSTPSTCDLEYDDALRNECTSADWTELY 632
>AF067945-6|AAV28326.1| 1167|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform c protein.
Length = 1167
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +1
Query: 274 ELTQSNKSLEPVLEDVELTNEDLSKDLELYENSVVEFDELLADMCRSAEWSGNY 435
EL + +K +LE ++ E K L +E+D+ L + C SA+W+ Y
Sbjct: 580 ELKKEDKIEHDILEHLK-NKEPTEKVLSTPSTCDLEYDDALRNECTSADWTELY 632
>AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform b protein.
Length = 1685
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +1
Query: 274 ELTQSNKSLEPVLEDVELTNEDLSKDLELYENSVVEFDELLADMCRSAEWSGNY 435
EL + +K +LE ++ E K L +E+D+ L + C SA+W+ Y
Sbjct: 580 ELKKEDKIEHDILEHLK-NKEPTEKVLSTPSTCDLEYDDALRNECTSADWTELY 632
>AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform d protein.
Length = 1995
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +1
Query: 274 ELTQSNKSLEPVLEDVELTNEDLSKDLELYENSVVEFDELLADMCRSAEWSGNY 435
EL + +K +LE ++ E K L +E+D+ L + C SA+W+ Y
Sbjct: 572 ELKKEDKIEHDILEHLK-NKEPTEKVLSTPSTCDLEYDDALRNECTSADWTELY 624
>AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform h protein.
Length = 2006
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +1
Query: 274 ELTQSNKSLEPVLEDVELTNEDLSKDLELYENSVVEFDELLADMCRSAEWSGNY 435
EL + +K +LE ++ E K L +E+D+ L + C SA+W+ Y
Sbjct: 584 ELKKEDKIEHDILEHLK-NKEPTEKVLSTPSTCDLEYDDALRNECTSADWTELY 636
>AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform a protein.
Length = 2007
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +1
Query: 274 ELTQSNKSLEPVLEDVELTNEDLSKDLELYENSVVEFDELLADMCRSAEWSGNY 435
EL + +K +LE ++ E K L +E+D+ L + C SA+W+ Y
Sbjct: 584 ELKKEDKIEHDILEHLK-NKEPTEKVLSTPSTCDLEYDDALRNECTSADWTELY 636
>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
C35C5.1 protein.
Length = 2962
Score = 28.3 bits (60), Expect = 2.7
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +1
Query: 235 KDFFNAPHLKLTDELTQSNKSLEPVLEDVELTNEDLSKD--LELYENSVVEFDEL 393
KD F L + E Q+ K + +L+D ELT +S+D E Y+ + EF+ L
Sbjct: 1271 KDMFGP--LPIAKENEQTEKDFQILLDDHELTLLTISRDPLNEKYQEARTEFERL 1323
>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
protein C35C5.1 protein.
Length = 2962
Score = 28.3 bits (60), Expect = 2.7
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +1
Query: 235 KDFFNAPHLKLTDELTQSNKSLEPVLEDVELTNEDLSKD--LELYENSVVEFDEL 393
KD F L + E Q+ K + +L+D ELT +S+D E Y+ + EF+ L
Sbjct: 1271 KDMFGP--LPIAKENEQTEKDFQILLDDHELTLLTISRDPLNEKYQEARTEFERL 1323
>U23179-12|AAN63445.1| 224|Caenorhabditis elegans Hypothetical
protein C27D6.4a protein.
Length = 224
Score = 28.3 bits (60), Expect = 2.7
Identities = 20/80 (25%), Positives = 40/80 (50%)
Frame = +1
Query: 130 PKKFSGFRHENEPPIKLLLFPFADTHPIRELAEFYKDFFNAPHLKLTDELTQSNKSLEPV 309
P+K+ + E E +K++ + +E K++ +A +L ++ NKSL+
Sbjct: 143 PQKYPLTKSEEES-LKIVRRKIKNKLSAQESRRKRKEYIDALEGRLHC-FSEENKSLKKQ 200
Query: 310 LEDVELTNEDLSKDLELYEN 369
+ +E +N DL + L YE+
Sbjct: 201 VHQLEASNRDLQQKLHQYES 220
>U23179-11|AAN63447.1| 293|Caenorhabditis elegans Hypothetical
protein C27D6.4c protein.
Length = 293
Score = 28.3 bits (60), Expect = 2.7
Identities = 20/80 (25%), Positives = 40/80 (50%)
Frame = +1
Query: 130 PKKFSGFRHENEPPIKLLLFPFADTHPIRELAEFYKDFFNAPHLKLTDELTQSNKSLEPV 309
P+K+ + E E +K++ + +E K++ +A +L ++ NKSL+
Sbjct: 212 PQKYPLTKSEEES-LKIVRRKIKNKLSAQESRRKRKEYIDALEGRLHC-FSEENKSLKKQ 269
Query: 310 LEDVELTNEDLSKDLELYEN 369
+ +E +N DL + L YE+
Sbjct: 270 VHQLEASNRDLQQKLHQYES 289
>U23179-10|AAN63446.1| 329|Caenorhabditis elegans Hypothetical
protein C27D6.4b protein.
Length = 329
Score = 28.3 bits (60), Expect = 2.7
Identities = 20/80 (25%), Positives = 40/80 (50%)
Frame = +1
Query: 130 PKKFSGFRHENEPPIKLLLFPFADTHPIRELAEFYKDFFNAPHLKLTDELTQSNKSLEPV 309
P+K+ + E E +K++ + +E K++ +A +L ++ NKSL+
Sbjct: 248 PQKYPLTKSEEES-LKIVRRKIKNKLSAQESRRKRKEYIDALEGRLHC-FSEENKSLKKQ 305
Query: 310 LEDVELTNEDLSKDLELYEN 369
+ +E +N DL + L YE+
Sbjct: 306 VHQLEASNRDLQQKLHQYES 325
>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
Length = 2962
Score = 28.3 bits (60), Expect = 2.7
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +1
Query: 235 KDFFNAPHLKLTDELTQSNKSLEPVLEDVELTNEDLSKD--LELYENSVVEFDEL 393
KD F L + E Q+ K + +L+D ELT +S+D E Y+ + EF+ L
Sbjct: 1271 KDMFGP--LPIAKENEQTEKDFQILLDDHELTLLTISRDPLNEKYQEARTEFERL 1323
>AF038608-17|AAC25822.2| 425|Caenorhabditis elegans Hypothetical
protein C09G12.9 protein.
Length = 425
Score = 28.3 bits (60), Expect = 2.7
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 268 TDELTQSNKSLEPVLEDVELTNEDLSKDLELYENSVVEFDELLAD 402
+DEL + + L+ +LE++E L E+Y E + L+D
Sbjct: 298 SDELREGQQKLKRMLEELETQRSSLQTACEIYTAKKAELAKALSD 342
>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical protein
ZK1067.2 protein.
Length = 2219
Score = 27.9 bits (59), Expect = 3.6
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 280 TQSNKSLEPVLEDVELTNEDLSKDLELYENSVVEFDEL 393
+Q+ K+ +P + +L +ED +KD E+S E DEL
Sbjct: 1016 SQTKKAKKPKFQGAQLDSEDENKDYFTVEDSDDEEDEL 1053
>U80445-2|AAB37795.2| 1029|Caenorhabditis elegans Hypothetical
protein C50F2.2 protein.
Length = 1029
Score = 27.9 bits (59), Expect = 3.6
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +1
Query: 7 CRNSARGLPVSPVKEKEIMSKSTQELDDSAASKSPNSLEMPPKKFSGFRHENE 165
C+NS + +P K K+ QEL+ K+P ++E P ++ + NE
Sbjct: 524 CQNSGQNEASNPTKLKD------QELNKHVVPKNPEAIETPDERQESVQKSNE 570
>U55376-3|AAA98005.3| 525|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 45 protein.
Length = 525
Score = 27.9 bits (59), Expect = 3.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 427 HSTQPIYTCRPTIHQTQQLNSHTAPNL 347
HS+ YTCRP + QQ N + P L
Sbjct: 103 HSSLESYTCRPPSFEQQQQNQNPDPPL 129
>U53141-3|AAA96105.3| 596|Caenorhabditis elegans Hypothetical
protein C14C11.3 protein.
Length = 596
Score = 27.5 bits (58), Expect = 4.8
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +1
Query: 286 SNKSLEPVLEDVELTNEDLSKDLELYENSVVEFD 387
S ++ +P+ ++V++ E S+D E Y+N V+ FD
Sbjct: 88 STENAKPITQEVKI--ERPSRDNEFYKNVVIHFD 119
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 31 PVSPVKEKEIMSKSTQELDDSAASKSPNSLEMPPK 135
P SP K+++ KS E S KSP E PK
Sbjct: 1701 PASPTKKEKSPEKSVVEEVKSPKEKSPEKAEEKPK 1735
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 37 SPVKEKEIMSKSTQELDDSAASKSPNSLEMPPK 135
SP K+++ S T++ D + KSP E PK
Sbjct: 1825 SPTKKEKSPSSPTKKTGDESKEKSPEKPEEKPK 1857
>AM748821-1|CAO72175.2| 596|Caenorhabditis elegans hexosaminidase
protein.
Length = 596
Score = 27.5 bits (58), Expect = 4.8
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +1
Query: 286 SNKSLEPVLEDVELTNEDLSKDLELYENSVVEFD 387
S ++ +P+ ++V++ E S+D E Y+N V+ FD
Sbjct: 88 STENAKPITQEVKI--ERPSRDNEFYKNVVIHFD 119
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 31 PVSPVKEKEIMSKSTQELDDSAASKSPNSLEMPPK 135
P SP K+++ KS E S KSP E PK
Sbjct: 1701 PASPTKKEKSPEKSVVEEVKSPKEKSPEKAEEKPK 1735
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 37 SPVKEKEIMSKSTQELDDSAASKSPNSLEMPPK 135
SP K+++ S T++ D + KSP E PK
Sbjct: 1825 SPTKKEKSPSSPTKKTGDESKEKSPEKPEEKPK 1857
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 31 PVSPVKEKEIMSKSTQELDDSAASKSPNSLEMPPK 135
P SP K+++ KS E S KSP E PK
Sbjct: 1701 PASPTKKEKSPEKSVVEEVKSPKEKSPEKAEEKPK 1735
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 37 SPVKEKEIMSKSTQELDDSAASKSPNSLEMPPK 135
SP K+++ S T++ D + KSP E PK
Sbjct: 1825 SPTKKEKSPSSPTKKTGDESKEKSPEKPEEKPK 1857
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 31 PVSPVKEKEIMSKSTQELDDSAASKSPNSLEMPPK 135
P SP K+++ KS E S KSP E PK
Sbjct: 1701 PASPTKKEKSPEKSVVEEVKSPKEKSPEKAEEKPK 1735
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 37 SPVKEKEIMSKSTQELDDSAASKSPNSLEMPPK 135
SP K+++ S T++ D + KSP E PK
Sbjct: 1825 SPTKKEKSPSSPTKKTGDESKEKSPEKPEEKPK 1857
>AC024826-15|AAF60790.1| 354|Caenorhabditis elegans Hypothetical
protein Y55F3AM.13 protein.
Length = 354
Score = 27.5 bits (58), Expect = 4.8
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 4 GCRNSARGLPVSPVKEKEIMSKSTQELDDSAASKSPNSLEMPPKK 138
G +SA G+P +P K + K ++ + A K S E PP+K
Sbjct: 103 GAASSAPGVPGAPAKLDKDAKKEARKAAKAEAVKKLASGEAPPQK 147
>Z78239-1|CAB01632.1| 232|Caenorhabditis elegans Hypothetical
protein C30G7.1 protein.
Length = 232
Score = 26.6 bits (56), Expect = 8.3
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 22 RGLPVSPVKEKEIMSKSTQELDDSAASKSPNSLEM--PPKKFSGFRHE 159
+G P+S +K++ +MSK + A + L+ P K SG H+
Sbjct: 160 KGKPISTMKKRGVMSKKRSSKNKMAPKAKSHGLKKKGPATKSSGLVHK 207
>AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein.
Length = 1751
Score = 26.6 bits (56), Expect = 8.3
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +1
Query: 175 KLLLFPFADTHPIRELAEFYKDFFNAPHLKLTDELTQSNKSLEPVLEDVELT 330
K L AD H R+ E + + K+ +LTQ K L + ED+E T
Sbjct: 1327 KALSAELADLHRKRDSMEARINKYLTHSAKINAKLTQFEKWLNAIEEDIEQT 1378
>AF002679-1|AAB60893.1| 232|Caenorhabditis elegans histone H1-like
protein protein.
Length = 232
Score = 26.6 bits (56), Expect = 8.3
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 22 RGLPVSPVKEKEIMSKSTQELDDSAASKSPNSLEM--PPKKFSGFRHE 159
+G P+S +K++ +MSK + A + L+ P K SG H+
Sbjct: 160 KGKPISTMKKRGVMSKKRSSKNKMAPKAKSHGLKKKGPATKSSGLVHK 207
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 26.6 bits (56), Expect = 8.3
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +1
Query: 175 KLLLFPFADTHPIRELAEFYKDFFNAPHLKLTDELTQSNKSLEPVLEDVELT 330
K L AD H R+ E + + K+ +LTQ K L + ED+E T
Sbjct: 1327 KALSAELADLHRKRDSMEARINKYLTHSAKINAKLTQFEKWLNAIEEDIEQT 1378
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.316 0.134 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,785,318
Number of Sequences: 27780
Number of extensions: 189426
Number of successful extensions: 792
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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