Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1002
         (451 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35400.1 68418.m04207 tRNA pseudouridine synthase family prot...    33   0.067
At5g39840.1 68418.m04828 ATP-dependent RNA helicase, mitochondri...    32   0.21 
At1g43320.1 68414.m04993 hypothetical protein                          31   0.48 
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila...    29   1.1  
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila...    29   1.1  
At2g20950.4 68415.m02474 expressed protein                             29   1.9  
At2g20950.3 68415.m02473 expressed protein                             29   1.9  
At2g20950.2 68415.m02472 expressed protein                             29   1.9  
At2g20950.1 68415.m02471 expressed protein                             29   1.9  
At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro...    28   3.4  
At1g04600.1 68414.m00454 myosin, putative similar to myosin (GI:...    28   3.4  
At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almos...    27   4.4  
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri...    27   4.4  
At2g42400.1 68415.m05248 expressed protein                             27   4.4  
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila...    27   5.9  
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila...    27   5.9  
At1g52820.1 68414.m05970 2-oxoglutarate-dependent dioxygenase, p...    27   5.9  
At2g28150.1 68415.m03419 expressed protein                             27   7.7  

>At5g35400.1 68418.m04207 tRNA pseudouridine synthase family protein
           weak similarity to  SP|P07649 tRNA pseudouridine
           synthase A (EC 4.2.1.70) (Uracil hydrolyase)
           {Escherichia coli}; contains Pfam profile PF01416: tRNA
           pseudouridine synthase
          Length = 420

 Score = 33.5 bits (73), Expect = 0.067
 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
 Frame = +1

Query: 178 LLLFPFADTHPIRELAEFYKDF-FNAPHLKLTDELTQSNKSLEPVL-EDVELTNEDLSKD 351
           L +FP  D  P+R+  E +++F F+    K  + L     + E ++ ED EL  E+ S  
Sbjct: 216 LYIFPLDDAEPLRKSGENHENFIFDENKKKQRNGLLSEEIAEEVIMSEDDELEIEETSNA 275

Query: 352 LELYEN----SVVEFDELL 396
           LE+ E     SV + D+LL
Sbjct: 276 LEVVEKPSDFSVSKVDQLL 294


>At5g39840.1 68418.m04828 ATP-dependent RNA helicase, mitochondrial,
           putative similar to mitochondrial RNA helicase
           [Arabidopsis thaliana] GI:5823579; contains Pfam profile
           PF00271: Helicase conserved C-terminal domain
          Length = 776

 Score = 31.9 bits (69), Expect = 0.21
 Identities = 25/73 (34%), Positives = 36/73 (49%)
 Frame = +1

Query: 208 PIRELAEFYKDFFNAPHLKLTDELTQSNKSLEPVLEDVELTNEDLSKDLELYENSVVEFD 387
           P+R LA    D  NA  +  +  LT   K   P    V  T E +S D ELYE +V++  
Sbjct: 306 PLRLLAMEVFDKVNALGIYCS-LLTGQEKKYVPFANHVSCTVEMVSTD-ELYEVAVLDEI 363

Query: 388 ELLADMCRSAEWS 426
           +++AD  R   W+
Sbjct: 364 QMMADPSRGHAWT 376


>At1g43320.1 68414.m04993 hypothetical protein
          Length = 118

 Score = 30.7 bits (66), Expect = 0.48
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
 Frame = -1

Query: 403 CRPTIHQTQQLNSH-TAPNL*--TNLRWLVLRLLKQALSFCSIVLAHLSTSSVAH 248
           CRP   Q++QL  + TA +L   +NL +L++  + + L  CSIV   +  S VAH
Sbjct: 54  CRPFDSQSEQLMMNPTADHLMVNSNLHYLMMNPISKHLVICSIVEHLVMNSIVAH 108


>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
           to 40S ribosomal protein S7 homolog GI:5532505 from
           [Brassica oleracea]
          Length = 191

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +1

Query: 274 ELTQSNKSLEPVLEDVELTNEDLSKDL-ELYENSVVEFD 387
           EL++ ++ +     D+E TN++L  +L +LY NS V+ D
Sbjct: 15  ELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVD 53


>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
           to 40S ribosomal protein S7 homolog GI:5532505 from
           [Brassica oleracea]
          Length = 191

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +1

Query: 274 ELTQSNKSLEPVLEDVELTNEDLSKDL-ELYENSVVEFD 387
           EL++ ++ +     D+E TN++L  +L +LY NS V+ D
Sbjct: 15  ELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVD 53


>At2g20950.4 68415.m02474 expressed protein
          Length = 530

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 262 KLTDELTQSNKSLEPVLEDVELTNEDLSKDLELYENSVVEFD 387
           K T E  +    L   L  +E+ +  + K+LELYE+ V++FD
Sbjct: 482 KETKECRERVTELAGRLGQLEMKDVRVKKNLELYESKVLKFD 523


>At2g20950.3 68415.m02473 expressed protein
          Length = 505

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 262 KLTDELTQSNKSLEPVLEDVELTNEDLSKDLELYENSVVEFD 387
           K T E  +    L   L  +E+ +  + K+LELYE+ V++FD
Sbjct: 457 KETKECRERVTELAGRLGQLEMKDVRVKKNLELYESKVLKFD 498


>At2g20950.2 68415.m02472 expressed protein
          Length = 503

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 262 KLTDELTQSNKSLEPVLEDVELTNEDLSKDLELYENSVVEFD 387
           K T E  +    L   L  +E+ +  + K+LELYE+ V++FD
Sbjct: 455 KETKECRERVTELAGRLGQLEMKDVRVKKNLELYESKVLKFD 496


>At2g20950.1 68415.m02471 expressed protein
          Length = 520

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 262 KLTDELTQSNKSLEPVLEDVELTNEDLSKDLELYENSVVEFD 387
           K T E  +    L   L  +E+ +  + K+LELYE+ V++FD
Sbjct: 472 KETKECRERVTELAGRLGQLEMKDVRVKKNLELYESKVLKFD 513


>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
           protein similar to PIR|JC7196 phytocyanin-related
           protein Pn14 {Ipomoea nil}; contains Pfam profile
           PF02298: Plastocyanin-like domain
          Length = 349

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 17/56 (30%), Positives = 21/56 (37%)
 Frame = +1

Query: 1   PGCRNSARGLPVSPVKEKEIMSKSTQELDDSAASKSPNSLEMPPKKFSGFRHENEP 168
           PG      G PVSP        KST  +  S+A  +     M PK  S     + P
Sbjct: 200 PGSMAPKSGSPVSPTTSPPAPPKSTSPVSPSSAPMTSPPAPMAPKSSSTIPPSSAP 255


>At1g04600.1 68414.m00454 myosin, putative similar to myosin
            (GI:499047) [Arabidopsis thaliana]
          Length = 1730

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
 Frame = +1

Query: 259  LKLTDELTQSNKS-----LEPVLEDVELTNEDLSKDLELYENSVVEFDEL 393
            +KL    TQ  KS     L+  L+D++L  E+LSK LE+  +   E ++L
Sbjct: 957  IKLQLRDTQETKSKEISDLQSALQDMQLEIEELSKGLEMTNDLAAENEQL 1006


>At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almost
           identical to CIP1 (GI:836950) [Arabidopsis thaliana]
          Length = 1305

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
 Frame = +1

Query: 157 ENEPPIKLLLFPFADTHPIRELAEFYKDFFNAPHLKLTDELTQSNKSLEPVLEDVELTNE 336
           E E  +KLL     D       AE  K   ++  L++TDEL Q+   ++ ++ ++  + +
Sbjct: 489 ELETQLKLLEQRVVDLSASLNAAEEEKKSLSSMILEITDELKQAQSKVQELVTELAESKD 548

Query: 337 DLS-KDLELYENSVVEFDE 390
            L+ K+ EL  +S VE  E
Sbjct: 549 TLTQKENEL--SSFVEVHE 565


>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
           ribosomal protein S7 homolog - Brassica oleracea,
           EMBL:AF144752
          Length = 190

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 274 ELTQSNKSLEPVLEDVELTNEDLSKDL-ELYENSVVEFD 387
           E T+  + +   L D+E TN++L  +L +LY N  V  D
Sbjct: 15  EPTECEEQVAQALFDLENTNQELKSELKDLYINQAVHMD 53


>At2g42400.1 68415.m05248 expressed protein
          Length = 450

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +1

Query: 70  STQELDDSAASKSPNSLEMPPKKFSG 147
           S++E+D+ A   +P+S+ +PP  F G
Sbjct: 202 SSEEIDNFAEFSTPSSVRVPPSAFLG 227


>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
           to ribosomal protein S7 GB:AAD26256 from [Secale
           cereale]
          Length = 191

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 280 TQSNKSLEPVLEDVELTNEDLSKDL-ELYENSVVEFD 387
           T+  + +   L D+E TN++L  +L +LY N  V+ D
Sbjct: 17  TEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMD 53


>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
           to ribosomal protein S7 GB:AAD26256 from [Secale
           cereale]
          Length = 191

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 280 TQSNKSLEPVLEDVELTNEDLSKDL-ELYENSVVEFD 387
           T+  + +   L D+E TN++L  +L +LY N  V+ D
Sbjct: 17  TEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMD 53


>At1g52820.1 68414.m05970 2-oxoglutarate-dependent dioxygenase,
           putative similar to AOP1 [Arabidopsis
           lyrata][GI:16118889]; contains Pfam profile PF03171:
           2OG-Fe(II) oxygenase superfamily domain
          Length = 317

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +1

Query: 286 SNKSLEPVLEDVELTNEDLSKDLELYENSVVEFDELLADMCRS 414
           SNK+L+P   + +LT  D+ K L+ Y      FD +  ++ +S
Sbjct: 18  SNKNLKPGEPEWDLTRADVQKALQDYGYFEASFDRIPFELRKS 60


>At2g28150.1 68415.m03419 expressed protein
          Length = 540

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 41/149 (27%), Positives = 63/149 (42%), Gaps = 12/149 (8%)
 Frame = +1

Query: 28  LPVSPVKEKEIMSKSTQELDDSAASKSPNSLEMPPKKFSGFRHENEPPIKLLLFPFADTH 207
           L    +K+  +   S++ +DDS++S S N+ +    K S    E  PP    +     + 
Sbjct: 136 LATQNMKQIVVEPPSSRSMDDSSSSSSMNNGK-GTNKHSHEDDELSPPALRSVSSSGVSP 194

Query: 208 PIRE--------LAEF--YKDFFNAPHLKLTDELTQSNKSLEPV--LEDVELTNEDLSKD 351
             R+        LAE+  YK    A     TDE T S +S  P+        T+ED+S +
Sbjct: 195 DSRDAKNSSSWCLAEYKVYKSEGLADASTQTDE-TVSGRSKTPIETFSRGVSTDEDVSSE 253

Query: 352 LELYENSVVEFDELLADMCRSAEWSGNYI 438
            E  EN++V           SAE S N +
Sbjct: 254 PETSENNLVSEASCAGKERESAEISRNSV 282


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.134    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,204,107
Number of Sequences: 28952
Number of extensions: 174953
Number of successful extensions: 609
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)