Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1001
         (582 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g59680.1 68414.m06713 F-box family protein similar to mDj6 GB...    31   0.56 
At4g18470.1 68417.m02738 negative regulator of systemic acquired...    29   3.0  
At1g76320.1 68414.m08866 far-red impaired responsive protein, pu...    29   3.0  

>At1g59680.1 68414.m06713 F-box family protein similar to mDj6
           GB:BAA88304 GI:6567123 from [Mus musculus]; contains
           weak hit to TIGRFAM TIGR01640 : F-box protein
           interaction domain and weak hit to Pfam PF00646: F-box
           domain
          Length = 264

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 23/73 (31%), Positives = 34/73 (46%)
 Frame = -2

Query: 305 DVGRVFFSLDFQREIIKTLIVHYFNEK*NSLYKRLYIQIS*SGIFSGYKDKSQQSFEHAL 126
           D G  F   + +  ++  L  H ++ K N  Y+RLYI I   G F+  K K   S E + 
Sbjct: 191 DPGSFFIDEEKKVVVVYDLDGHLYSTKKNCAYQRLYI-IGEDGYFTSVKIKCSDSPEFSA 249

Query: 125 KLCSV*CYIFTSY 87
              S+  Y  T+Y
Sbjct: 250 YAPSLVTYKPTNY 262


>At4g18470.1 68417.m02738 negative regulator of systemic acquired
           resistance (SNI1) identical to negative regulator of
           systemic acquired resistance SNI1 [Arabidopsis thaliana]
           gi|5758933|gb|AAD50900
          Length = 432

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 463 FYKKKKLYENSNNWHLIKIAFIQNIFMVQMRNFK 564
           F  + ++YE + NW L+K +F+  +   +  NFK
Sbjct: 181 FTPRNQVYEETMNWSLLKESFLNLLLASRKVNFK 214


>At1g76320.1 68414.m08866 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282;
           contains Pfam:PF03101 domain: FAR1 family
          Length = 732

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = +1

Query: 454 YCVFYKKKKLYENSNNWHLIKIAFIQNIFMVQMRNFKRKTFDR 582
           YC+++   +L  N + W + +  F++ +F    R++  + FDR
Sbjct: 298 YCLWHVLDQLPRNLDYWSMWQDTFMKKLFKCIYRSWSEEEFDR 340


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,274,968
Number of Sequences: 28952
Number of extensions: 241322
Number of successful extensions: 446
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)