Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1000
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    30   0.31 
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    28   0.96 
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom...    27   2.9  
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p...    26   3.9  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    26   3.9  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    26   5.1  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    26   5.1  

>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +2

Query: 494 NLTAEDPSFGNCNYTTDFENGELL 565
           N+  EDPSF    YT D ENG+LL
Sbjct: 466 NMNREDPSF---RYTQDLENGQLL 486


>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 28.3 bits (60), Expect = 0.96
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -2

Query: 586 NSGYDFLKELSILKVGCVITVSEAWVFGSQVQTDSVEFVFG*LHFE 449
           NSGY+  +      +G ++T + A  F S V    + ++F  L+FE
Sbjct: 109 NSGYELHQSNFFRNIGTILTFAFAGTFISAVTLGVLVYIFSFLNFE 154


>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 419

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 607 KAKEDGDNSGYDFLKELSILKVGCVI 530
           K   DG   GYDFL+ +   K+ C++
Sbjct: 301 KGASDGKGLGYDFLRHVERAKMLCLV 326


>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 446

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +2

Query: 368 QEGTIEYQFWTNL*P-SVVKFSNETLISFKMESTEDEFYTICLNLTAEDPSFGNCN 532
           + G + Y F  +  P +++KFSN+ ++ F   +  D F  +   L  ++ +F   N
Sbjct: 106 KSGALIYFFRAHYQPLTILKFSNDGMVLFTASNDGDVFAWLISTLVDQNSTFETSN 161


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -1

Query: 398 SRTDIQ*SPPVFPLDTGAEFHTWLQICPELIFNSPILFFPWTPEPSL 258
           S T    S    P ++ A  +++    P  +   P+L  P TPEPSL
Sbjct: 341 SITSFDSSVTTVPSNSPATLNSYTTSVPSGMSRHPMLMNPSTPEPSL 387


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 367 FFPWTPEPSFTLGYKFVQN*YSIVPSCFSLG 275
           F P+TP PS T+   ++ N   + PS  S G
Sbjct: 287 FNPYTPAPSITVPPNYIPNTAMMGPSYSSFG 317


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -1

Query: 329 LQICPEL--IFNSPILFFPWTPEPSLFTSRYKDVS 231
           ++ C EL   FN P LF+   P+  L+T  Y+ +S
Sbjct: 703 MENCLELKSSFNRPNLFYEIKPKKDLYTELYRFIS 737


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,465,709
Number of Sequences: 5004
Number of extensions: 50339
Number of successful extensions: 124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)