Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1000
         (626 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U00040-2|AAA50667.4|  366|Caenorhabditis elegans Hypothetical pr...    30   1.6  
L12018-1|AAA65458.1|  518|Caenorhabditis elegans Polk (dna polym...    28   4.8  
AF068713-6|AAC17797.1|  282|Caenorhabditis elegans Serpentine re...    27   8.3  

>U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical protein
            C27F2.8 protein.
          Length = 1715

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = -1

Query: 422  LPHLVTNLSRTDIQ*SPPVFPLDTGAEFHTWLQICPELIFNSPILFFPWTPEPS 261
            L HL  NL+ T+   + P+F + +G EF+ W         +S  LF P T +PS
Sbjct: 1654 LSHLGINLASTESSATGPMFTMFSGPEFNLW---------SSSSLFHPPTQQPS 1698


>U00040-2|AAA50667.4|  366|Caenorhabditis elegans Hypothetical
           protein C18H2.2 protein.
          Length = 366

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = -2

Query: 619 NDSDKAKEDGDNSGYDFLK-ELSILKVGCVITVSEAWVFGSQVQTDSVEF 473
           N+ D   E G +  Y  +K +  ILK G  + V+    FG++ ++DS++F
Sbjct: 289 NNCDVEFEAGYDRSYITIKPDFGILKAGSSVKVTITKSFGNESESDSIQF 338


>L12018-1|AAA65458.1|  518|Caenorhabditis elegans Polk (dna
           polymerase kappa) homologprotein 1 protein.
          Length = 518

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -2

Query: 598 EDGDNSGYDFLKELSILKVGCVITVSEAWVFGSQVQT 488
           E+  N+  +FLK+L I KVG +  V EA +    +QT
Sbjct: 298 ENDKNAIMEFLKDLPIRKVGGIGRVCEAQLKAMDIQT 334


>AF068713-6|AAC17797.1|  282|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 67 protein.
          Length = 282

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 85  CCIHILKLFDWFRVESVSFCCCRECCVLLTVS*VV 189
           CC +      W   E V FCC     VLL++  VV
Sbjct: 162 CCYNACYAHFWISREQVMFCCIVMMTVLLSLKLVV 196


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,601,943
Number of Sequences: 27780
Number of extensions: 278348
Number of successful extensions: 677
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)