Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1000
         (626 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   4.3  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   4.3  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   4.3  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   9.8  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              21   9.8  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   9.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.8  

>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -1

Query: 257 FTSRYKDVSCKRGSSA*TRIKKFTT*LTVNKTQHSRQQQKLTDSTRNQSNNFK 99
           +   +K+ S  R     +R  K  + L+ NKT H+    K   +  N +NN K
Sbjct: 59  YRETWKERSRDRTERERSREPKIISSLS-NKTIHNNNNYKYNYNNNNYNNNCK 110


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -1

Query: 257 FTSRYKDVSCKRGSSA*TRIKKFTT*LTVNKTQHSRQQQKLTDSTRNQSNNFK 99
           +   +K+ S  R     +R  K  + L+ NKT H+    K   +  N +NN K
Sbjct: 59  YRETWKERSRDRTERERSREPKIISSLS-NKTIHNNNNYKYNYNNNNYNNNCK 110


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -1

Query: 257 FTSRYKDVSCKRGSSA*TRIKKFTT*LTVNKTQHSRQQQKLTDSTRNQSNNFK 99
           +   +K+ S  R     +R  K  + L+ NKT H+    K   +  N +NN K
Sbjct: 59  YRETWKERSRDRTERERSREPKIISSLS-NKTIHNNNNYKYNYNNNNYNNNCK 110


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 542 DFENGELLEKVVSRVVPIFFGFIGIVGL 625
           D  N +   KVVS+   +F G +G  G+
Sbjct: 303 DILNTQSFGKVVSKNGVLFLGLVGNSGI 330


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +2

Query: 542 DFENGELLEKVVSRVVPIFFGFIGI 616
           D +NG++   ++ +V+P  F  IG+
Sbjct: 83  DKKNGKIRYNLLKKVIPEAFKEIGV 107


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = -1

Query: 257 FTSRYKDVSCKRGSSA*TRIKKFTT*LTVNKTQHSRQQQKLTDSTRNQSNNFK 99
           +   +K+ S  R     +R  K  + L+ N+T H+    K   +  N +NN K
Sbjct: 59  YRETWKERSRDRTERERSREPKIISSLS-NRTIHNNNNYKYNYNNNNYNNNCK 110


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 324 NLSRTDIQ*SHPVFPLDTGAEFIY 253
           N++  D   S   FP +TG  F+Y
Sbjct: 915 NVNMLDTYESVHSFPTETGLPFVY 938


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,152
Number of Sequences: 438
Number of extensions: 3371
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)