Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG1000
         (626 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g04865.1 68415.m00502 expressed protein ; expression supporte...    30   1.1  
At4g33360.1 68417.m04743 terpene cyclase/mutase-related low simi...    29   3.3  
At2g18900.1 68415.m02205 transducin family protein / WD-40 repea...    28   5.8  

>At2g04865.1 68415.m00502 expressed protein ; expression supported
           by MPSS
          Length = 667

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +1

Query: 262 LGSGVQGKNRMGLLNISSGQICNQV*NSAPVSKGKTGGDY*ISVLDKFVTKC 417
           LG G+ GK  +GL   +   +C +    +P S   +GG   +S L    ++C
Sbjct: 110 LGLGIDGKPVIGLTYTTCSAVCERYLGKSPASNSASGGMVKLSWLKDNFSEC 161


>At4g33360.1 68417.m04743 terpene cyclase/mutase-related low
           similarity to squalene-hopene cyclase from Zymomonas
           mobilis [SP|P33990]
          Length = 344

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
 Frame = -1

Query: 416 HLVTNLSR--TDIQ*SPPVFPLDTG--AEFHTWLQICP--ELIFNSPILFFPWTPEPSLF 255
           H V  L R  +D+   PP   L  G   ++ +    C   +++F++  L  PW P+PS F
Sbjct: 37  HSVRALVRRTSDLSDLPPEVELAYGDVTDYRSLTDACSGCDIVFHAAALVEPWLPDPSRF 96

Query: 254 TS 249
            S
Sbjct: 97  IS 98


>At2g18900.1 68415.m02205 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400);
           related to LACK protective antigen (GI:13625467)
           [Leishmania donovani]
          Length = 804

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -1

Query: 368 VFPLDTGAEFHTWLQICPELIFNSPILFFPWTPEPSL 258
           V+ LDTG +     +  P +   SP+L+F W+P+P+L
Sbjct: 309 VWQLDTGKK-----KFLPRI--GSPLLYFMWSPDPTL 338


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,747,295
Number of Sequences: 28952
Number of extensions: 256122
Number of successful extensions: 606
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)