Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0999
         (606 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    25   0.76 
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   1.8  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   5.4  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   9.4  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 283 ALDTLVFNAGANLDVINVVESTADWLVILRLFLV 182
           A+D L+ NA  N+DV    +   DW  I  + L+
Sbjct: 84  AIDILINNATINIDVTLQNDEVLDWKKIFDINLL 117


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -1

Query: 111 KTYVSKPHIIPRSL*IVS--YPRAEFLQPGGS 22
           +T + K + IP+S  I    Y + EFL PGGS
Sbjct: 45  QTPLIKLNNIPKSYGIKCEIYAKCEFLNPGGS 76


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 476 YGQIIKSRRLNRKSVNSDGT 417
           +  + +S R+N  +VNS+GT
Sbjct: 444 FAYLSRSERINYYNVNSNGT 463


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -2

Query: 368 LPSRVYSFFSSIPVEQYIYPTVQCFNCCRFGHT 270
           LPS + +   S P+   + P   C+ C   G T
Sbjct: 348 LPSAILAMRLSHPLHGNLLPPGVCYTCDVCGKT 380


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,911
Number of Sequences: 438
Number of extensions: 4230
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)