Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0999
(606 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 38 0.004
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 32 0.34
At3g49410.1 68416.m05401 transcription factor-related contains w... 31 0.45
At3g48810.1 68416.m05330 pentatricopeptide (PPR) repeat-containi... 30 1.0
At5g18636.1 68418.m02212 hypothetical protein 30 1.4
At5g35960.1 68418.m04330 protein kinase, putative contains prote... 29 1.8
At4g19950.1 68417.m02922 expressed protein 29 1.8
At5g32613.1 68418.m03881 zinc knuckle (CCHC-type) family protein... 29 2.4
At5g25200.1 68418.m02987 hypothetical protein similar to zinc fi... 29 2.4
At2g17920.1 68415.m02075 expressed protein similar to zinc finge... 29 2.4
At1g53300.1 68414.m06041 thioredoxin family protein contains Pfa... 29 2.4
At3g17670.1 68416.m02256 ferredoxin-related contains Pfam PF0051... 29 3.2
At5g24450.1 68418.m02882 transcription factor-related low simila... 28 4.2
At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein... 28 5.5
At2g41590.1 68415.m05139 expressed protein similar to zinc finge... 28 5.5
At1g80220.1 68414.m09388 hypothetical protein 28 5.5
At1g56560.1 68414.m06505 beta-fructofuranosidase, putative / inv... 28 5.5
At1g16980.1 68414.m02062 alpha, alpha-trehalose-phosphate syntha... 28 5.5
At3g05820.1 68416.m00653 beta-fructofuranosidase, putative / inv... 27 7.3
At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC1... 27 7.3
At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative simila... 27 9.6
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 38.3 bits (85), Expect = 0.004
Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = -2
Query: 299 CFNCCRFGHTRVQCRSKPRCNKCG-GEHSGLACNTETFSCVNCRGE-HMATNKS 144
C NC R GH C + CN CG H C E+ C NCR H+A+N S
Sbjct: 57 CNNCKRPGHFARDCSNVSVCNNCGLPGHIAAECTAES-RCWNCREPGHVASNCS 109
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -2
Query: 299 CFNCCRFGHTRVQCRSKPRCNKC 231
C NC GH CR+ P CN C
Sbjct: 159 CKNCRTSGHIARDCRNDPVCNIC 181
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Frame = -2
Query: 302 QCFNCCRFGHTRVQCRSKPRCNKCG-GEHSGLAC-NTETFS-----CVNC-RGEHMATNK 147
+C+NC GH C ++ C+ CG H C N+++ + C NC + H+A +
Sbjct: 94 RCWNCREPGHVASNCSNEGICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADC 153
Query: 146 SCPEFSRQTNIKKHMSQN 93
+ + + H++++
Sbjct: 154 TNDKACKNCRTSGHIARD 171
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 31.9 bits (69), Expect = 0.34
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Frame = -2
Query: 305 VQCFNCCRFGHTRVQC-----RSKPRCNKCGG-EHSGLACNTETFSCVNCRGE-HMATNK 147
V C++C GHT C R KP C CG EH C ++ C C+ H A K
Sbjct: 166 VSCYSCGEQGHTSFNCPTPTKRRKP-CFICGSLEHGAKQC-SKGHDCYICKKTGHRA--K 221
Query: 146 SCPE 135
CP+
Sbjct: 222 DCPD 225
Score = 29.1 bits (62), Expect = 2.4
Identities = 25/91 (27%), Positives = 33/91 (36%), Gaps = 2/91 (2%)
Frame = -2
Query: 305 VQCFNCCRFGHTRVQC-RSKPRCNKCGGEHSGLACNT-ETFSCVNCRGEHMATNKSCPEF 132
V C+ C + GH+ + C R N+ N+ E C C GE + CP
Sbjct: 285 VSCYRCGQLGHSGLACGRHYEESNENDSATPERLFNSREASECYRC-GEEGHFARECPNS 343
Query: 131 SRQTNIKKHMSQNLISYQEASKLFPILVPNS 39
S + SQ L S F PNS
Sbjct: 344 SSISTSHGRESQTLCYRCNGSGHFARECPNS 374
Score = 27.1 bits (57), Expect = 9.6
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 9/43 (20%)
Frame = -2
Query: 305 VQCFNCCRFGHTRVQCRSKP--------RCNKCGG-EHSGLAC 204
VQC+ C FGH C +P C +CG HSGLAC
Sbjct: 261 VQCYICKSFGHL---CCVEPGNSLSWAVSCYRCGQLGHSGLAC 300
>At3g49410.1 68416.m05401 transcription factor-related contains weak
similarity to transcription factor IIIC63 (GI:5281316)
[Homo sapiens]
Length = 559
Score = 31.5 bits (68), Expect = 0.45
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 394 WS*LLTDSLFPLECIPFFQVFQLNSIFIQR 305
W+ + LFP +C F Q+F+L+ +IQR
Sbjct: 327 WNDICAFKLFPFKCQTFLQLFELDDEYIQR 356
>At3g48810.1 68416.m05330 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 659
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = -2
Query: 161 MATNKSCPEFSRQTNIKKHMSQNLISYQEASKLFPILVPNSCSPGDPLFRA 9
M T+ CP TN+ + + ++ ++EA L I+ +C+P P F A
Sbjct: 413 MLTSGCCPNVVVYTNMVEALCRHS-KFKEAESLIEIMSKENCAPSVPTFNA 462
>At5g18636.1 68418.m02212 hypothetical protein
Length = 367
Score = 29.9 bits (64), Expect = 1.4
Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 2/128 (1%)
Frame = -2
Query: 542 IKGIPQEWTHEDIVDNLQIPEGYGQIIKSRRLNRKSVNSDGTSWIPTQTVVLTFDGQSLP 363
I+GIP + E+ V L+I + G+II L+ S ++I + D
Sbjct: 127 IRGIPLPYVSEETV--LEIAQDLGEIIS---LDFHEATSPQIAFIRVRVRFGITDRLRFF 181
Query: 362 SRVYSFFSSIPVEQYIYPTVQ--CFNCCRFGHTRVQCRSKPRCNKCGGEHSGLACNTETF 189
R+ ++ Y ++ C +C RF H R C + R E + L C++
Sbjct: 182 QRIIFDSGETATIRFQYERLRRLCSSCFRFTHNRAYCPYRQRSLSIARERA-LFCDSVQR 240
Query: 188 SCVNCRGE 165
S +N + +
Sbjct: 241 SSMNSQSQ 248
>At5g35960.1 68418.m04330 protein kinase, putative contains protein
kinase domain, Pfam:PF00069
Length = 429
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 560 ICKMGLIKGIPQEWTHEDIVDNLQIPEGY 474
IC GL K +P+ WTH IV + GY
Sbjct: 273 ICDFGLAKWLPENWTHH-IVSKFEGTFGY 300
>At4g19950.1 68417.m02922 expressed protein
Length = 321
Score = 29.5 bits (63), Expect = 1.8
Identities = 29/102 (28%), Positives = 45/102 (44%)
Frame = -3
Query: 379 TDSLFPLECIPFFQVFQLNSIFIQRYNVSIVVALDTLVFNAGANLDVINVVESTADWLVI 200
T S PL F F S+ + YN ++ L TL+ +D+ NVV + +VI
Sbjct: 118 TMSAIPLVLKRLFITFLWVSLLMLAYNTVFLIFLVTLI----VAVDLQNVVLAVFSLVVI 173
Query: 199 LRLFLVLTVEVNIWLQTNLALSLVDKQILKNICLKTSYHTKK 74
LFLV+ V + +S+++ I +K SY K
Sbjct: 174 FVLFLVVHVYMTALWHLASVVSVLE-PIYGLAAMKKSYELLK 214
>At5g32613.1 68418.m03881 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 457
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 320 YIYPTVQCFNCCRFGHTRVQCRSKPRCNK 234
Y P +C NC R+GH +C SKP K
Sbjct: 308 YPRPPPKCLNCGRYGHLLSRC-SKPLMKK 335
>At5g25200.1 68418.m02987 hypothetical protein similar to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 367
Score = 29.1 bits (62), Expect = 2.4
Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 2/128 (1%)
Frame = -2
Query: 542 IKGIPQEWTHEDIVDNLQIPEGYGQIIKSRRLNRKSVNSDGTSWIPTQTVVLTFDGQSLP 363
I+GIP + E+ V L+I + G+II L+ S ++I + D
Sbjct: 127 IRGIPLPYVSEETV--LEIAQDLGEIIS---LDFHEATSPQIAFIRVRVRFGITDRLRFF 181
Query: 362 SRVYSFFSSIPVEQYIYPTVQ--CFNCCRFGHTRVQCRSKPRCNKCGGEHSGLACNTETF 189
R+ ++ Y ++ C +C RF H R C + R E + L C++
Sbjct: 182 QRIIFDSGETATIRFQYERLRRLCSSCFRFTHNRAYCPYRQRPLSIARERA-LFCDSVQR 240
Query: 188 SCVNCRGE 165
S +N + +
Sbjct: 241 SSMNSQSQ 248
>At2g17920.1 68415.m02075 expressed protein similar to zinc finger
protein [Arabidopsis thaliana] GI:976277
Length = 307
Score = 29.1 bits (62), Expect = 2.4
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 2/113 (1%)
Frame = -2
Query: 542 IKGIPQEWTHEDIVDNLQIPEGYGQIIKSRRLNRKSVNSDGTSWIPTQTVVLTFDGQSLP 363
++GIP + E+ L+I + G II L+ S ++I + V D
Sbjct: 127 MRGIPFLYVSEETA--LEIAQEIGAIIS---LDFHDTTSTQIAYIRVRVRVGITDSLRFF 181
Query: 362 SRVYSFFSSIPVEQYIYPTVQ--CFNCCRFGHTRVQCRSKPRCNKCGGEHSGL 210
R+ + ++ Y ++ C NC RF H R C +PR E + L
Sbjct: 182 QRITFESGESALIRFQYERLRRICSNCFRFTHNRNYCPYRPRVQILDRERAAL 234
>At1g53300.1 68414.m06041 thioredoxin family protein contains Pfam
profiles PF00085: Thioredoxin, PF00515: TPR Domain;
similar to tetratricopeptide repeat protein 2
(GI:7248701) [Drosophila melanogaster]; similar to DnaJ
homolog subfamily C member 7 (Tetratricopeptide repeat
protein 2) (TPR repeat protein 2) (Swiss-Prot:Q99615)
[Homo sapiens]
Length = 699
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = -2
Query: 578 VIPTYNICKMGLIK--GIPQEWTHEDIVDNLQIPEGYGQIIKSRRLN-RKSVNSDGTSWI 408
V+PT NIC G I+ G+ Q + D++ + G+G I++ ++ K N+ G S
Sbjct: 137 VLPTGNICPSGKIQITGMTQSRSRSDVLGSGTGTYGHGSIMRGGGISPAKPTNTGGGSNS 196
Query: 407 P 405
P
Sbjct: 197 P 197
>At3g17670.1 68416.m02256 ferredoxin-related contains Pfam PF00515:
TPR Domain; similar to ferredoxin PetF2 (GI:22651984)
[Synechococcus sp. PCC 7002]
Length = 366
Score = 28.7 bits (61), Expect = 3.2
Identities = 18/40 (45%), Positives = 19/40 (47%), Gaps = 7/40 (17%)
Frame = -2
Query: 305 VQCFNCCRFGHTR-VQCRSKPR------CNKCGGEHSGLA 207
V CFNCC G T V PR C CGG SGL+
Sbjct: 69 VDCFNCCGKGRTNCVDVEMLPRGEWPKWCKSCGG--SGLS 106
>At5g24450.1 68418.m02882 transcription factor-related low
similarity to transcription factor IIIC63 [Homo sapiens]
GI:5281316
Length = 545
Score = 28.3 bits (60), Expect = 4.2
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -3
Query: 394 WS*LLTDSLFPLECIPFFQVFQLNSIFIQR 305
W + +FP +C F Q+F+L+ +IQ+
Sbjct: 335 WDDICAFKVFPFKCQTFLQLFELDDEYIQQ 364
>At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 254
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Frame = -2
Query: 308 TVQCFNCCRFGHTRVQC------RSKPRCNKCGGE-HSGLACNTETFSC 183
TV C+ C + GHT + C P C CG E H C+ C
Sbjct: 76 TVSCYRCGQLGHTGLACGRHYDDSVSPSCFICGREGHFEHQCHNSFSVC 124
>At2g41590.1 68415.m05139 expressed protein similar to zinc finger
protein [Arabidopsis thaliana] GI:976277
Length = 367
Score = 27.9 bits (59), Expect = 5.5
Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
Frame = -2
Query: 542 IKGIPQEWTHEDIVDNLQIPEGYGQIIKSRRLNRKSVNSDGTSWIPTQTVVLTFDGQSLP 363
I+GIP + E+ V ++I + G+++ L+ S ++I + D
Sbjct: 127 IRGIPLPYVSEETV--MEIAQDLGEVLM---LDYHDTTSIQIAYIRVRVRFGITDRLRFF 181
Query: 362 SRVYSFFSSIPVEQYIYPTVQ--CFNCCRFGHTRVQCRSKPR 243
R+ ++ Y ++ C +C RF H R C +PR
Sbjct: 182 QRIVFDSGETATIRFQYERLRRICSSCFRFTHNRAYCPYRPR 223
>At1g80220.1 68414.m09388 hypothetical protein
Length = 255
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 203 NTETFSCVNCRGEHMATNKSCPEFSRQTNIK 111
NT+T C CRGE + T K+ R N K
Sbjct: 97 NTKTLHCPLCRGEVLETKKASKTARRFMNAK 127
>At1g56560.1 68414.m06505 beta-fructofuranosidase, putative /
invertase, putative / saccharase, putative /
beta-fructosidase, putative similar to neutral invertase
[Daucus carota] GI:4200165; contains Pfam profile
PF04853: Plant neutral invertase
Length = 616
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/70 (22%), Positives = 34/70 (48%)
Frame = -3
Query: 229 VESTADWLVILRLFLVLTVEVNIWLQTNLALSLVDKQILKNICLKTSYHTKKPLNCFLSS 50
V+S W+++LR + +T + ++ + ++ + +++ N+CL + L S
Sbjct: 253 VDSGLWWIILLRAYGKITGDFSLQERIDVQTGI---KLIMNLCLADGFDMFPTLLVTDGS 309
Query: 49 CRIPAARGIH 20
C I GIH
Sbjct: 310 CMIDRRMGIH 319
>At1g16980.1 68414.m02062 alpha, alpha-trehalose-phosphate synthase,
UDP-forming, putative / trehalose-6-phosphate synthase,
putative / UDP-glucose-glucosephosphate
glucosyltransferase, putative similar to
trehalose-6-phosphate synthase SL-TPS/P [Selaginella
lepidophylla] GI:4100325; contains Pfam profiles
PF00982: Glycosyltransferase family 20, PF02358:
Trehalose-phosphatase
Length = 821
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -3
Query: 382 LTDSLFPLECIPFFQVFQLNSIFIQRYN 299
LT+SL ++CIP F LN +F Q YN
Sbjct: 73 LTESLAEMKCIPVF----LNGVFDQYYN 96
>At3g05820.1 68416.m00653 beta-fructofuranosidase, putative /
invertase, putative / saccharase, putative /
beta-fructosidase, putative similar to neutral invertase
[Daucus carota] GI:4200165; contains Pfam profile
PF04853: Plant neutral invertase
Length = 633
Score = 27.5 bits (58), Expect = 7.3
Identities = 16/70 (22%), Positives = 34/70 (48%)
Frame = -3
Query: 229 VESTADWLVILRLFLVLTVEVNIWLQTNLALSLVDKQILKNICLKTSYHTKKPLNCFLSS 50
V+S W+++LR + +T + ++ + ++ + +++ N+CL + L S
Sbjct: 269 VDSGLWWIILLRAYGKITGDYSLQERIDVQTGI---KMIANLCLADGFDMFPTLLVTDGS 325
Query: 49 CRIPAARGIH 20
C I GIH
Sbjct: 326 CMIDRRMGIH 335
>At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC13
[Arabidopsis thaliana] gi|21105767|gb|AAM34782; contains
Pfam domains, PF00439: Bromodomain and PF00240: Ubiquitin
family
Length = 1919
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = -2
Query: 197 ETFSCVNC-RGEHMATNKSCPEFSRQT 120
E F C C + HM TNK CP + T
Sbjct: 1395 ENFVCGACGQHGHMRTNKHCPRYRENT 1421
>At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative similar
to WRN (Werner syndrome) protein - Mus musculus,
EMBL:AF241636; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00627: UBA/TS-N domain
Length = 858
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 293 NCCRFGHTRVQCRSKPRCNKCGGEHSGLACNT 198
+C R+G QCR+K G E S CN+
Sbjct: 628 DCFRYGMNTSQCRAKILVEYFGEEFSSKKCNS 659
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,248,617
Number of Sequences: 28952
Number of extensions: 307539
Number of successful extensions: 912
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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