Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0998
(606 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi... 239 8e-64
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi... 233 5e-62
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi... 233 5e-62
At2g22340.1 68415.m02651 hypothetical protein 33 0.19
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP... 32 0.26
At2g07020.1 68415.m00803 protein kinase family protein contains ... 30 1.4
At2g34150.1 68415.m04180 expressed protein 29 3.2
At1g11980.1 68414.m01384 ubiquitin family protein similar to Cha... 28 4.2
At5g09560.1 68418.m01107 KH domain-containing protein various pr... 27 7.3
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein... 27 7.3
At3g54570.1 68416.m06038 calmodulin-binding protein-related cont... 27 7.3
At4g26490.1 68417.m03812 expressed protein 27 9.6
At3g24810.1 68416.m03113 kip-related protein 5 (KRP5) / cyclin-d... 27 9.6
At3g16160.1 68416.m02040 tesmin/TSO1-like CXC domain-containing ... 27 9.6
>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
to laminin receptor-like protein GB:U01955 [Arabidopsis
thaliana]; identical to cDNA laminin receptor homologue
GI:16379
Length = 298
Score = 239 bits (586), Expect = 8e-64
Identities = 109/172 (63%), Positives = 131/172 (76%)
Frame = +2
Query: 89 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 268
L+ E DV M AA HLG +N N+QME YV+KRR DG ++ NL +TWEKL +AAR +VA
Sbjct: 12 LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71
Query: 269 IENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 448
IENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDP 131
Query: 449 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLA 604
DHQPI E + NIP+IA C+TDSP+RFVDI IP N K HSIG ++WLLA
Sbjct: 132 RTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLA 183
>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 280
Score = 233 bits (571), Expect = 5e-62
Identities = 105/168 (62%), Positives = 128/168 (76%)
Frame = +2
Query: 101 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 280
E D+ ML+A HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17 EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76
Query: 281 ADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDH 460
D+ V S+RP+GQRAVLKFA +TG IAGR TPG FTNQ+Q +F EPRLLI+ DP DH
Sbjct: 77 KDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDH 136
Query: 461 QPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLA 604
QPI E + NIP IA C+TDSP+ FVDI IP N K HSIG ++WLLA
Sbjct: 137 QPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLA 184
>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 332
Score = 233 bits (571), Expect = 5e-62
Identities = 105/168 (62%), Positives = 128/168 (76%)
Frame = +2
Query: 101 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 280
E D+ ML+A HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17 EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76
Query: 281 ADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDH 460
D+ V S+RP+GQRAVLKFA +TG IAGR TPG FTNQ+Q +F EPRLLI+ DP DH
Sbjct: 77 KDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDH 136
Query: 461 QPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLA 604
QPI E + NIP IA C+TDSP+ FVDI IP N K HSIG ++WLLA
Sbjct: 137 QPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLA 184
>At2g22340.1 68415.m02651 hypothetical protein
Length = 358
Score = 32.7 bits (71), Expect = 0.19
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 139 SWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC 258
SW LP+GD +Q C WY + S +G+ + C
Sbjct: 188 SWTEASLLPEGDCFIQLNCLWYKPKEDTSVMGRKMASSDC 227
>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
identical to SP|Q9GCB9 Mitochondrial ribosomal protein
S2 {Arabidopsis thaliana}; contains Pfam profile
PF00318: ribosomal protein S2
Length = 219
Score = 32.3 bits (70), Expect = 0.26
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 422 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD-IAIPCNTKSS 571
P ++V D + I EAS + IPV+A+ + + PL F + I P + S
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPARDS 181
>At2g07020.1 68415.m00803 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 700
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 377 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 478
TP TNQ++ A E +LDP PI EA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653
>At2g34150.1 68415.m04180 expressed protein
Length = 700
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = -3
Query: 550 DSNVHKS*WGVCVAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTW 380
D +H+ W S + FSN L + +Q +QE+ E S D S TW
Sbjct: 308 DELIHQDPWAASEISSGTHSYSN-GFSNPLYDISGIQEHQESEEVESSCDTESIKTW 363
>At1g11980.1 68414.m01384 ubiquitin family protein similar to Chain
A, Structure Of Ubiquitin-Like Protein, Rub1 GI:6729726
from [Arabidopsis thaliana]
Length = 78
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +1
Query: 205 PCDQLASYLGKTCSGCSCCRSHREPR*CVRHLITALRSACC 327
P Q Y GK + + + R V HL+ ALR CC
Sbjct: 38 PVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGGCC 78
>At5g09560.1 68418.m01107 KH domain-containing protein various
predicted RNA binding proteins, Arabidopsis thaliana
Length = 563
Score = 27.5 bits (58), Expect = 7.3
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = +2
Query: 419 EPRLLIVLDPAQDHQPITEASYVNIPVI---ALCNTDSPLRFVDIAIPCNTKSS 571
+PR+ + P+ DH+ IT AS N PV L + +R VD+ I C+ +S+
Sbjct: 271 QPRIDYLPHPSYDHRLITSAS-KNPPVTIKQPLQASKDDIRQVDLKILCSNESA 323
>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
contains PF01422: NF-X1 type zinc finger
Length = 912
Score = 27.5 bits (58), Expect = 7.3
Identities = 23/78 (29%), Positives = 27/78 (34%)
Frame = +1
Query: 109 CHQNACCNHPSWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSHREPR*C 288
CH C P G++ P G Q CD +A G TC C HR P C
Sbjct: 312 CHAGECGLCPYQGKRS-CPCGKRFYQGLS----CDVVAPLCGGTCDKVLGCGYHRCPERC 366
Query: 289 VRHLITALRSACCTEVCR 342
R T+ CR
Sbjct: 367 HRGPCLETCRIVVTKSCR 384
>At3g54570.1 68416.m06038 calmodulin-binding protein-related
contains similarity to potato calmodulin-binding protein
PCBP GI:17933110 from [Solanum tuberosum]
Length = 417
Score = 27.5 bits (58), Expect = 7.3
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -3
Query: 577 RVGRLGVAWDSNVHKS 530
R GR+G WD+NVH++
Sbjct: 107 RSGRIGRCWDANVHRA 122
>At4g26490.1 68417.m03812 expressed protein
Length = 200
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -1
Query: 426 RGSRNAAWIWLVKAPGVKRPAIGVAPVCAANFST 325
R SR + WIW V RP I V + AN T
Sbjct: 29 RSSRTSLWIWCVAVFLAIRPRIPVFDIPNANLHT 62
>At3g24810.1 68416.m03113 kip-related protein 5 (KRP5) /
cyclin-dependent kinase inhibitor 5 (ICK5) identical to
cyclin-dependent kinase inhibitor 5 (krp5) [Arabidopsis
thaliana] GI:14422293
Length = 189
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -3
Query: 400 LVSKSTWCETSRNRRSTGVRGKLQYSTLTEGP**DDEHIS 281
L+ C+T R S+G KL+ T TE D+E IS
Sbjct: 79 LIPSVNQCQTKNPRASSGPAKKLEPDTTTEEACGDNERIS 118
>At3g16160.1 68416.m02040 tesmin/TSO1-like CXC domain-containing
protein low similarity to cysteine-rich polycomb-like
protein (cpp1) [Glycine max] GI:4218187; contains Pfam
profile PF03638: Tesmin/TSO1-like CXC domain
Length = 360
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = +1
Query: 169 GDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSHREPR*C 288
G C Q+ C CD AS G C+ C C H C
Sbjct: 68 GCRCKQSKCLKLYCDCFAS--GVVCTDCDCVDCHNNSEKC 105
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,196,967
Number of Sequences: 28952
Number of extensions: 347280
Number of successful extensions: 744
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -