Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0996
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    28   1.3  
SPAC22F8.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.0  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   7.0  
SPBC1734.09 |||NST UDP-N-acetylglucosamine transporter|Schizosac...    25   7.0  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    25   9.3  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           25   9.3  

>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 454 VYTFMNEYIQPFIYLKFYDKITPVTIYYQNI 362
           ++ F N      I L+ YDKITP T+ ++ +
Sbjct: 404 IHDFFNNLRDGLILLQAYDKITPNTVNWKKV 434


>SPAC22F8.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 133

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 244 LFIYTPLSPYYFCL 203
           LF+Y+PLS  Y+CL
Sbjct: 39  LFLYSPLSASYYCL 52


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 318 LHFFFGLNHKNYFNENILY 262
           LH FF L H ++F    +Y
Sbjct: 369 LHLFFSLRHNSFFESYFIY 387


>SPBC1734.09 |||NST UDP-N-acetylglucosamine
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +2

Query: 485 RQRWFVIVVNLTLALNTLSSI 547
           R+RWFV+VV +  A+N L+++
Sbjct: 65  RKRWFVVVV-MFFAINVLNNV 84


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -1

Query: 158 FNTLQTVHSGPPPSAWWGYAVYKA 87
           F  L+  H   PP A W Y  Y A
Sbjct: 392 FELLKAWHENLPPRAVWSYTNYSA 415


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = -1

Query: 638 LSIDGYKFIIGGYIHPIHVTGK---HTNTFVHKILSLMY 531
           L    ++  +   I  I V GK   H NTFV KI  L++
Sbjct: 57  LKTSAFELKLNELIREISVRGKYFRHANTFVEKIKDLIF 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,587,716
Number of Sequences: 5004
Number of extensions: 54691
Number of successful extensions: 85
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)