Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0996
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1088 + 30301654-30303480                                         28   5.5  
11_06_0216 - 21345865-21346152,21347153-21347297,21348311-213483...    28   7.2  
03_06_0107 - 31684645-31684710,31685524-31685606,31686284-316863...    27   9.6  

>03_05_1088 + 30301654-30303480
          Length = 608

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -1

Query: 635 SIDGYKFIIGGYIHP-IHVTGKHTNTFVHKILSLMYLEQG 519
           S+D  +  +G  +H  + VTG H+  ++   L  MYL+ G
Sbjct: 138 SVDAERRSVGKQVHAHVVVTGLHSRVYLRNSLIKMYLDAG 177


>11_06_0216 -
           21345865-21346152,21347153-21347297,21348311-21348360,
           21348564-21348938,21349717-21349842
          Length = 327

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -2

Query: 163 LFLILYKRYIPAPLHLRGGDTQYIRRVGRCGAQYRG 56
           +F I ++R + A     GGD+++ +RVGR GA  RG
Sbjct: 234 MFFIEFRRRVQA-----GGDSRHGKRVGRGGASGRG 264


>03_06_0107 -
           31684645-31684710,31685524-31685606,31686284-31686340,
           31686414-31686470,31686560-31686821
          Length = 174

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = -2

Query: 109 GDTQYIRRVGRCGAQYRG 56
           GD++Y RRVGR GA  RG
Sbjct: 14  GDSRYSRRVGREGASGRG 31


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,787,482
Number of Sequences: 37544
Number of extensions: 306264
Number of successful extensions: 569
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)