Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0996
         (641 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39225| Best HMM Match : NIF (HMM E-Value=0)                         28   5.6  
SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20)             28   5.6  
SB_31955| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_39225| Best HMM Match : NIF (HMM E-Value=0)
          Length = 1772

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 612  NWRVYSPDSCNWKTHKHFCSQNIELNVFRARV 517
            N RV   + C W+ H+H  ++     +FR R+
Sbjct: 934  NLRVCFAELCTWRVHEHGAAEETCFRMFRGRL 965


>SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20)
          Length = 1037

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 609 WRVYSPDSCNWKTHKHFCSQNIELNVFRARVKFTTITNH 493
           +RV SPD  +W+T KH  + + E +   A  +F+  T H
Sbjct: 276 FRVPSPDPRSWRTRKHHRTSSNESSEGVADREFSANTGH 314


>SB_31955| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 355

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/53 (22%), Positives = 27/53 (50%)
 Frame = +2

Query: 428 YVFIHKSIYSYSE*KNHTSRQRWFVIVVNLTLALNTLSSIFCEQKCLCVFQLH 586
           Y+F +  ++SY     +T+   + +++  + + + TL S+FC  K     + H
Sbjct: 162 YMFHYGKVFSYINYYTNTAAYIYTILLKIVYITVPTLISLFCYYKIFTTVKAH 214


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,725,232
Number of Sequences: 59808
Number of extensions: 374812
Number of successful extensions: 701
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)