Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0996
         (641 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31420.1 68414.m03848 leucine-rich repeat transmembrane prote...    29   2.6  
At3g03750.2 68416.m00381 SET domain-containing protein low simil...    29   3.5  
At3g03750.1 68416.m00380 SET domain-containing protein low simil...    29   3.5  
At2g15000.2 68415.m01708 expressed protein                             27   8.0  
At2g15000.1 68415.m01707 expressed protein                             27   8.0  

>At1g31420.1 68414.m03848 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profile: PF00069:
           Eukaryotic protein kinase domain
          Length = 592

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -3

Query: 618 IHNWRVYSPDSCNW 577
           IH WR   PD CNW
Sbjct: 51  IHQWRPEDPDPCNW 64


>At3g03750.2 68416.m00381 SET domain-containing protein low
           similarity to G9a [Homo sapiens] GI:287865; contains
           Pfam profiles PF00856: SET domain, PF05033: Pre-SET
           motif
          Length = 354

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = -1

Query: 167 YFIFNTLQTVHSGPP-PSAWWGYA 99
           YFI+   Q   S PP P  WWG A
Sbjct: 91  YFIYTPFQIPASSPPPPRQWWGAA 114


>At3g03750.1 68416.m00380 SET domain-containing protein low
           similarity to G9a [Homo sapiens] GI:287865; contains
           Pfam profiles PF00856: SET domain, PF05033: Pre-SET
           motif
          Length = 338

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = -1

Query: 167 YFIFNTLQTVHSGPP-PSAWWGYA 99
           YFI+   Q   S PP P  WWG A
Sbjct: 91  YFIYTPFQIPASSPPPPRQWWGAA 114


>At2g15000.2 68415.m01708 expressed protein
          Length = 97

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 423 GCMYSFIKVYTLIANKKITHHGN 491
           GC  SF+ +Y+++A  ++T H N
Sbjct: 58  GCTQSFLPLYSVVATSQLTSHLN 80


>At2g15000.1 68415.m01707 expressed protein
          Length = 93

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 423 GCMYSFIKVYTLIANKKITHHGN 491
           GC  SF+ +Y+++A  ++T H N
Sbjct: 58  GCTQSFLPLYSVVATSQLTSHLN 80


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,991,568
Number of Sequences: 28952
Number of extensions: 260988
Number of successful extensions: 496
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)