Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0995
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz...    30   0.28 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.37 
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    29   0.48 
SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi...    27   1.5  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    27   2.0  
SPAC823.10c |||mitochondrial carrier with solute carrier repeats...    27   2.6  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    27   2.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   6.0  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   6.0  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    25   7.9  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    25   7.9  

>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 451

 Score = 29.9 bits (64), Expect = 0.28
 Identities = 23/82 (28%), Positives = 39/82 (47%)
 Frame = -2

Query: 327 GLCAMAIDLCATSKARALIPLNASTPLTLVAASDRSNTFLRLRFNEKALSSFSKFVTPSL 148
           GLC+M +   A  +  + + L+  T     AA +   T L    NE  LSS    +  +L
Sbjct: 227 GLCSMYVHEDADMELASKLVLDGKTDYP--AACNAIETLL---INEAVLSSHLPKIAETL 281

Query: 147 SSSKIVPRLNSSSIAKKKDMDK 82
           + +K+  + + +S+   KDM K
Sbjct: 282 TEAKVTLKCDPASLKVLKDMPK 303


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 18/66 (27%), Positives = 38/66 (57%)
 Frame = -2

Query: 297 ATSKARALIPLNASTPLTLVAASDRSNTFLRLRFNEKALSSFSKFVTPSLSSSKIVPRLN 118
           ++S + +  P ++S+ ++  ++S  S++F     + K+ SSFS  V+ S S+S      +
Sbjct: 327 SSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSS 386

Query: 117 SSSIAK 100
           SSS ++
Sbjct: 387 SSSSSR 392


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 277 IDTPECVHSFDPSRCVGQIKHFPQITLQRKSVK 179
           +D   C+HSFD  +  G ++ FP+  +  +SVK
Sbjct: 420 LDNLSCLHSFDGKQNFGLVQSFPKKEVYCESVK 452


>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 615

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +2

Query: 128 GTILDDDKDGVTNFEKLLNAFSLKRNLRKVFD-LSDAATRVKGVDAFRGI 274
           G I DD+K G   F+K LN  S+ +N+    + L     R+ G++A  GI
Sbjct: 3   GGIFDDNKAGFETFQKNLN--SVAKNVSDASNILLSMDKRLSGLEASAGI 50


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 23/83 (27%), Positives = 38/83 (45%)
 Frame = -2

Query: 396  IAERPITAHGIPNTSEKLTLLT*GLCAMAIDLCATSKARALIPLNASTPLTLVAASDRSN 217
            +A      H   N S  LT+L   +CA+ ID+ A    R L P +     T +     ++
Sbjct: 1475 LARSQFLHHFGKNPSWWLTMLFVMVCALTIDIVAQMLRRTLRPTD-----TDIFVEMEND 1529

Query: 216  TFLRLRFNEKALSSFSKFVTPSL 148
             F+R RF +++   F +   PS+
Sbjct: 1530 AFVRSRFEQES-GEFLQANAPSV 1551


>SPAC823.10c |||mitochondrial carrier with solute carrier
           repeats|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 296

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 197 KRNLRKVFDLSDAATRVKGVDAFRGI-NALALLVAHKSMAMAHNPY 331
           K+NL K+FD    ++ V+G    R I N ++ L++  +     NP+
Sbjct: 186 KQNLHKLFDRFSPSSSVQGTVPHRNIVNVMSGLISGATATAITNPF 231


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = -2

Query: 183 LSSFSKFVTPSLSSSKIVPRLN 118
           LSSF K  TPSL    I P LN
Sbjct: 123 LSSFLKIYTPSLPEDPIFPLLN 144


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 379  DRSLSDTIHRQFPVPQ-WVPERLQPPARAREERHDRLEEQAHQPMV 513
            D S++  + ++ PVP    P+ L PP+ +  ++   +E   H P V
Sbjct: 1169 DESVTRVV-KELPVPAPAAPQTLNPPSVSTVQQSKPIESNTHTPEV 1213


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +2

Query: 272 INALALLVAHKSMA-MAHNPYVNKVSFSEVF 361
           +N    + A KS+  +  NPY N VSF   F
Sbjct: 398 VNPRGFICAEKSVCRVVENPYSNTVSFDNFF 428



 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 302 KSMAMAHNPYVNKVSFSEVFGMPWAVIG 385
           KS+  +  P V  VSF+  FG+  A++G
Sbjct: 320 KSLKESSTPLVQVVSFNAFFGVMIAILG 347


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 210 LRLRFNEKALSSFSKFVTPSLSSSKIVPRLNSSSIAKKKDMDKAF 76
           LRL+  +   +S SK  TPS S+  + P  +  S+     M  ++
Sbjct: 9   LRLKSRQGFETSVSKPSTPSYSTYSLSPTFSDKSVLSPSTMSDSY 53


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = -2

Query: 189 KALSSFSKFVT-PSLSSSKIVPRLNSSSIAKKKDMDKAFPNE*GRL 55
           +A S++++  +   LSS+KI    + ++ ++KK+MD +  N  GRL
Sbjct: 7   EASSTYAQVTSNDELSSNKIYMNADQNN-SRKKEMDGSLQNNGGRL 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,255,296
Number of Sequences: 5004
Number of extensions: 44246
Number of successful extensions: 152
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)